COL12A1 collagen type XII alpha 1 chain [Gallus gallus (chicken)] - Gene

Summary

Official Symbol: COL12A1provided by CGNC
Official Full Name: collagen type XII alpha 1 chainprovided by CGNC
Primary source: CGNC:49526
See related: Ensembl:ENSGALG00010004096
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Gallus gallus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 3

Exon count:: 70

Annotation release	Status	Assembly	Chr	Location
106	current	bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2)	3	NC_052534.1 (80494177..80599905)
106	current	bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2)	3	NC_052575.1 (80285904..80391612)

Chromosome 3 - NC_052534.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Collagen XII interacts with avian tenascin-X through its NC3 domain
Title: Collagen XII interacts with avian tenascin-X through its NC3 domain.

Submit: New GeneRIF Correction

General gene information

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Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables protein binding	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: collagen alpha-1(XII) chain

Names: collagen XII; collagen, type XII, alpha 1; fibrochimerin; type XII collagen

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_205021.4 → NP_990352.2 collagen alpha-1(XII) chain precursor

Status: VALIDATED

Source sequence(s)

JAENSK010000065

UniProtKB/Swiss-Prot

P13944, Q04509

UniProtKB/TrEMBL

A0A1L1RPW4

Related

ENSGALP00010005636.1, ENSGALT00010009597.1

Conserved Domains (5) summary

smart00210
Location:2522 → 2714

TSPN; Thrombospondin N-terminal -like domains

cd00063
Location:2120 → 2199

FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...

cd01482
Location:1196 → 1359

vWA_collagen_alphaI-XII-like; Collagen: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different ...

pfam00041
Location:723 → 800

fn3; Fibronectin type III domain

pfam01391
Location:2763 → 2825

Collagen; Collagen triple helix repeat (20 copies)

RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

NC_052534.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Range

80494177..80599905

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_040696832.2 → XP_040552766.1 collagen alpha-1(XII) chain isoform X1

UniProtKB/Swiss-Prot

P13944, Q04509

UniProtKB/TrEMBL

A0A1L1RPW4

Related

ENSGALP00010005629.1, ENSGALT00010009577.1

Conserved Domains (5) summary

smart00210
Location:2522 → 2714

TSPN; Thrombospondin N-terminal -like domains

cd00063
Location:2120 → 2199

FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...

cd01482
Location:1196 → 1359

vWA_collagen_alphaI-XII-like; Collagen: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different ...

pfam00041
Location:723 → 800

fn3; Fibronectin type III domain

pfam01391
Location:2763 → 2825

Collagen; Collagen triple helix repeat (20 copies)
XM_015284739.4 → XP_015140225.1 collagen alpha-1(XII) chain isoform X1

UniProtKB/Swiss-Prot

P13944, Q04509

UniProtKB/TrEMBL

A0A1L1RPW4

Conserved Domains (5) summary

smart00210
Location:2522 → 2714

TSPN; Thrombospondin N-terminal -like domains

cd00063
Location:2120 → 2199

FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...

cd01482
Location:1196 → 1359

vWA_collagen_alphaI-XII-like; Collagen: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different ...

pfam00041
Location:723 → 800

fn3; Fibronectin type III domain

pfam01391
Location:2763 → 2825

Collagen; Collagen triple helix repeat (20 copies)
XM_046938509.1 → XP_046794465.1 collagen alpha-1(XII) chain isoform X5
XM_046938506.1 → XP_046794462.1 collagen alpha-1(XII) chain isoform X1

UniProtKB/TrEMBL

A0A1L1RPW4
XM_046938508.1 → XP_046794464.1 collagen alpha-1(XII) chain isoform X1

UniProtKB/TrEMBL

A0A1L1RPW4
XM_046938511.1 → XP_046794467.1 collagen alpha-1(XII) chain isoform X5
XM_046938507.1 → XP_046794463.1 collagen alpha-1(XII) chain isoform X1

UniProtKB/TrEMBL

A0A1L1RPW4
XM_015284742.4 → XP_015140228.1 collagen alpha-1(XII) chain isoform X3

UniProtKB/Swiss-Prot

P13944, Q04509

UniProtKB/TrEMBL

A0A1D5P8I8

Related

ENSGALP00010005635.1, ENSGALT00010009589.1

Conserved Domains (5) summary

pfam01391
Location:2767 → 2893

Collagen; Collagen triple helix repeat (20 copies)

smart00210
Location:2522 → 2714

TSPN; Thrombospondin N-terminal -like domains

cd00063
Location:2120 → 2199

FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...

cd01482
Location:1196 → 1359

vWA_collagen_alphaI-XII-like; Collagen: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different ...

pfam00041
Location:723 → 800

fn3; Fibronectin type III domain
XM_015284744.4 → XP_015140230.1 collagen alpha-1(XII) chain isoform X5

Conserved Domains (5) summary

pfam01391
Location:1605 → 1731

Collagen; Collagen triple helix repeat (20 copies)

smart00210
Location:1360 → 1552

TSPN; Thrombospondin N-terminal -like domains

cd00063
Location:958 → 1037

FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...

cd01482
Location:34 → 197

vWA_collagen_alphaI-XII-like; Collagen: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different ...

pfam00041
Location:222 → 301

fn3; Fibronectin type III domain
XM_015284743.3 → XP_015140229.1 collagen alpha-1(XII) chain isoform X4

UniProtKB/Swiss-Prot

P13944, Q04509

UniProtKB/TrEMBL

F1NX22

Related

ENSGALP00010005631.1, ENSGALT00010009585.1

Conserved Domains (5) summary

pfam01391
Location:2767 → 2893

Collagen; Collagen triple helix repeat (20 copies)

smart00210
Location:2522 → 2714

TSPN; Thrombospondin N-terminal -like domains

cd00063
Location:2120 → 2199

FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...

cd01482
Location:1196 → 1359

vWA_collagen_alphaI-XII-like; Collagen: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different ...

pfam00041
Location:723 → 800

fn3; Fibronectin type III domain
XM_040696833.2 → XP_040552767.1 collagen alpha-1(XII) chain isoform X2

UniProtKB/TrEMBL

A0A8V0XG00

Conserved Domains (4) summary

smart00060
Location:1432 → 1501

FN3; Fibronectin type 3 domain

smart00210
Location:2480 → 2672

TSPN; Thrombospondin N-terminal -like domains

cd00063
Location:681 → 758

FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...

cd01482
Location:1154 → 1317

vWA_collagen_alphaI-XII-like; Collagen: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different ...

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

NC_052575.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Range

80285904..80391612

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_046913161.1 → XP_046769117.1 collagen alpha-1(XII) chain isoform X1

UniProtKB/TrEMBL

A0A1L1RPW4
XM_046913162.1 → XP_046769118.1 collagen alpha-1(XII) chain isoform X1

UniProtKB/TrEMBL

A0A1L1RPW4
XM_046913169.1 → XP_046769125.1 collagen alpha-1(XII) chain isoform X5
XM_046913160.1 → XP_046769116.1 collagen alpha-1(XII) chain isoform X1

UniProtKB/TrEMBL

A0A1L1RPW4
XM_046913164.1 → XP_046769120.1 collagen alpha-1(XII) chain isoform X1

UniProtKB/TrEMBL

A0A1L1RPW4
XM_046913170.1 → XP_046769126.1 collagen alpha-1(XII) chain isoform X5
XM_046913163.1 → XP_046769119.1 collagen alpha-1(XII) chain isoform X1

UniProtKB/TrEMBL

A0A1L1RPW4
XM_046913166.1 → XP_046769122.1 collagen alpha-1(XII) chain isoform X3

UniProtKB/TrEMBL

A0A1D5P8I8
XM_046913168.1 → XP_046769124.1 collagen alpha-1(XII) chain isoform X5
XM_046913167.1 → XP_046769123.1 collagen alpha-1(XII) chain isoform X4

UniProtKB/TrEMBL

F1NX22
XM_046913165.1 → XP_046769121.1 collagen alpha-1(XII) chain isoform X2