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TENM1 teneurin transmembrane protein 1 [ Gallus gallus (chicken) ]

Gene ID: 395668, updated on 10-Oct-2024

Summary

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Official Symbol
TENM1provided by CGNC
Official Full Name
teneurin transmembrane protein 1provided by CGNC
Primary source
CGNC:49426
See related
Ensembl:ENSGALG00010011658
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Also known as
ODZ1; TEN-1; ten-m1
Orthologs
human mouse all
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Genomic context

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See TENM1 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
37
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 4 NC_052535.1 (14636627..15483477)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 4 NC_052576.1 (14669119..15516634)

Chromosome 4 - NC_052535.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112532362 Neighboring gene uncharacterized LOC107052094 Neighboring gene uncharacterized LOC112532396 Neighboring gene uncharacterized LOC121110638 Neighboring gene uncharacterized LOC121110639 Neighboring gene microRNA 6679 Neighboring gene SH2 domain containing 1A

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Teneurin-1 is expressed in interconnected regions of the developing brain and is processed in vivo. Kenzelmann D, et al. BMC Dev Biol, 2008 Mar 25. PMID 18366734, Free PMC Article
  2. Teneurin-1, a vertebrate homologue of the Drosophila pair-rule gene ten-m, is a neuronal protein with a novel type of heparin-binding domain. Minet AD, et al. J Cell Sci, 1999 Jun. PMID 10341219
  3. The intracellular domain of teneurin-1 interacts with MBD1 and CAP/ponsin resulting in subcellular codistribution and translocation to the nuclear matrix. Nunes SM, et al. Exp Cell Res, 2005 Apr 15. PMID 15777793
  4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Teneurin-1 and -2 are expressed by distinct interconnected populations of neurons in the developing central nervous system
    Title: Teneurin-1 is expressed in interconnected regions of the developing brain and is processed in vivo.
Submit: New GeneRIF Correction

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cell adhesion molecule binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein heterodimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein homodimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in neuron development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in neuron projection IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
teneurin-1
Names
odz, odd Oz/ten-m homolog 1
odz, odd Oz/ten-m homolog 1(Drosophila)
protein Odd Oz/ten-m homolog 1
tenascin-M1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001397993.1 → NP_001384922.1  teneurin-1

    Status: VALIDATED

    Source sequence(s)
    JAENSK010000071
    UniProtKB/TrEMBL
    F1NN19
    Related
    ENSGALP00010016010.1, ENSGALT00010027904.1
    Conserved Domains (9) summary
    COG3209
    Location:1798 → 2367
    RhsA; Uncharacterized conserved protein RhsA, contains 28 RHS repeats [General function prediction only]
    cd05819
    Location:1170 → 1209
    NHL; NHL repeat [structural motif]
    cl18310
    Location:1141 → 1501
    NHL; NHL repeat unit of beta-propeller proteins
    pfam05593
    Location:1617 → 1649
    RHS_repeat; RHS Repeat
    pfam06484
    Location:23 → 298
    Ten_N; Teneurin Intracellular Region
    pfam15636
    Location:2621 → 2698
    Tox-GHH; GHH signature containing HNH/Endo VII superfamily nuclease toxin
    NF033662
    Location:772 → 801
    acid_disulf_rpt; acidic double-disulfide repeat
    NF033759
    Location:516 → 740
    exchanger_TraA; outer membrane exchange protein TraA
    cl19567
    Location:692 → 733
    DSL; Delta serrate ligand

  2. NM_001397994.1 → NP_001384923.1  teneurin-1

    Status: VALIDATED

    Source sequence(s)
    JAENSK010000071
    UniProtKB/TrEMBL
    F1NN19
    Conserved Domains (9) summary
    COG3209
    Location:1798 → 2367
    RhsA; Uncharacterized conserved protein RhsA, contains 28 RHS repeats [General function prediction only]
    cd05819
    Location:1170 → 1209
    NHL; NHL repeat [structural motif]
    cl18310
    Location:1141 → 1501
    NHL; NHL repeat unit of beta-propeller proteins
    pfam05593
    Location:1617 → 1649
    RHS_repeat; RHS Repeat
    pfam06484
    Location:23 → 298
    Ten_N; Teneurin Intracellular Region
    pfam15636
    Location:2621 → 2698
    Tox-GHH; GHH signature containing HNH/Endo VII superfamily nuclease toxin
    NF033662
    Location:772 → 801
    acid_disulf_rpt; acidic double-disulfide repeat
    NF033759
    Location:516 → 740
    exchanger_TraA; outer membrane exchange protein TraA
    cl19567
    Location:692 → 733
    DSL; Delta serrate ligand

  3. NM_204862.2 → NP_990193.2  teneurin-1

    Status: VALIDATED

    Source sequence(s)
    JAENSK010000071
    UniProtKB/TrEMBL
    F1NN19
    Related
    ENSGALP00010016005.1, ENSGALT00010027894.1
    Conserved Domains (9) summary
    COG3209
    Location:1798 → 2367
    RhsA; Uncharacterized conserved protein RhsA, contains 28 RHS repeats [General function prediction only]
    cd05819
    Location:1170 → 1209
    NHL; NHL repeat [structural motif]
    cl18310
    Location:1141 → 1501
    NHL; NHL repeat unit of beta-propeller proteins
    pfam05593
    Location:1617 → 1649
    RHS_repeat; RHS Repeat
    pfam06484
    Location:23 → 298
    Ten_N; Teneurin Intracellular Region
    pfam15636
    Location:2621 → 2698
    Tox-GHH; GHH signature containing HNH/Endo VII superfamily nuclease toxin
    NF033662
    Location:772 → 801
    acid_disulf_rpt; acidic double-disulfide repeat
    NF033759
    Location:516 → 740
    exchanger_TraA; outer membrane exchange protein TraA
    cl19567
    Location:692 → 733
    DSL; Delta serrate ligand

RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052535.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    14636627..15483477
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046939904.1 → XP_046795860.1  teneurin-1 isoform X1

    UniProtKB/TrEMBL
    A0A1D5PWG0

  2. XM_015278189.4 → XP_015133675.1  teneurin-1 isoform X1

    UniProtKB/TrEMBL
    A0A1D5PWG0, A0A8V0YAJ9
    Related
    ENSGALP00010016007.1, ENSGALT00010027901.1
    Conserved Domains (10) summary
    COG3209
    Location:1806 → 2375
    RhsA; Uncharacterized conserved protein RhaS, contains 28 RHS repeats [General function prediction only]
    cd05819
    Location:1178 → 1217
    NHL; NHL repeat [structural motif]
    TIGR01643
    Location:1838 → 1873
    YD_repeat_2x; YD repeat (two copies)
    TIGR03696
    Location:2327 → 2405
    Rhs_assc_core; RHS repeat-associated core domain
    pfam01500
    Location:577 → 713
    Keratin_B2; Keratin, high sulfur B2 protein
    pfam05593
    Location:1625 → 1659
    RHS_repeat; RHS Repeat
    pfam06484
    Location:23 → 298
    Ten_N; Teneurin Intracellular Region
    pfam07974
    Location:513 → 539
    EGF_2; EGF-like domain
    pfam15636
    Location:2631 → 2706
    Tox-GHH; GHH signature containing HNH/Endo VII superfamily nuclease toxin
    cl18310
    Location:1149 → 1509
    NHL; NHL repeat unit of beta-propeller proteins

  3. XM_015278190.4 → XP_015133676.1  teneurin-1 isoform X2

    UniProtKB/TrEMBL
    A0A8V0YAJ9
    Conserved Domains (10) summary
    COG3209
    Location:1805 → 2374
    RhsA; Uncharacterized conserved protein RhaS, contains 28 RHS repeats [General function prediction only]
    cd05819
    Location:1177 → 1216
    NHL; NHL repeat [structural motif]
    TIGR01643
    Location:1837 → 1872
    YD_repeat_2x; YD repeat (two copies)
    TIGR03696
    Location:2326 → 2404
    Rhs_assc_core; RHS repeat-associated core domain
    pfam01500
    Location:576 → 712
    Keratin_B2; Keratin, high sulfur B2 protein
    pfam05593
    Location:1624 → 1658
    RHS_repeat; RHS Repeat
    pfam06484
    Location:23 → 298
    Ten_N; Teneurin Intracellular Region
    pfam07974
    Location:512 → 538
    EGF_2; EGF-like domain
    pfam15636
    Location:2630 → 2705
    Tox-GHH; GHH signature containing HNH/Endo VII superfamily nuclease toxin
    cl18310
    Location:1148 → 1508
    NHL; NHL repeat unit of beta-propeller proteins

  4. XM_040698712.2 → XP_040554646.1  teneurin-1 isoform X3

    UniProtKB/TrEMBL
    A0A8V0Y5U3
    Related
    ENSGALP00010016006.1, ENSGALT00010027899.1
    Conserved Domains (5) summary
    COG3209
    Location:1719 → 2288
    RhsA; Uncharacterized conserved protein RhsA, contains 28 RHS repeats [General function prediction only]
    cd00054
    Location:624 → 647
    EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
    cd05819
    Location:1091 → 1130
    NHL; NHL repeat [structural motif]
    cl18310
    Location:1062 → 1422
    NHL; NHL repeat unit of beta-propeller proteins
    pfam01500
    Location:490 → 626
    Keratin_B2; Keratin, high sulfur B2 protein

  5. XM_046939905.1 → XP_046795861.1  teneurin-1 isoform X4

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052576.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    14669119..15516634
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046915511.1 → XP_046771467.1  teneurin-1 isoform X1

    UniProtKB/TrEMBL
    A0A1D5PWG0

  2. XM_046915510.1 → XP_046771466.1  teneurin-1 isoform X1

    UniProtKB/TrEMBL
    A0A1D5PWG0

  3. XM_046915512.1 → XP_046771468.1  teneurin-1 isoform X2

  4. XM_046915513.1 → XP_046771469.1  teneurin-1 isoform X3

  5. XM_046915514.1 → XP_046771470.1  teneurin-1 isoform X4

Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9W6V6.1 GenPept UniProtKB/Swiss-Prot:Q9W6V6

Gene LinkOut

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