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HOXB3 homeobox B3 [ Gallus gallus (chicken) ]

Gene ID: 395502, updated on 17-Aug-2024

Summary

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Symbol
HOXB3provided by CGNC
Full Name
homeobox B3provided by CGNC
Primary source
CGNC:49352
See related
Ensembl:ENSGALG00010023428
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Also known as
2.7; CHOX; HOXB4; CHOX-Z; HOXB-3
Orthologs
human mouse all
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Genomic context

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See HOXB3 in Genome Data Viewer
Location:
chromosome: 27
Exon count:
16
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 27 NC_052558.1 (3412953..3472771)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 27 NC_052599.1 (4544868..4615245)

Chromosome 27 - NC_052558.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124417424 Neighboring gene homeobox B8 Neighboring gene homeobox B7 Neighboring gene homeobox B6 Neighboring gene homeobox B5 Neighboring gene uncharacterized LOC107055283 Neighboring gene microRNA 10a Neighboring gene homeobox B4 Neighboring gene uncharacterized LOC107055285 Neighboring gene uncharacterized LOC124417425 Neighboring gene homeobox B2 Neighboring gene homeobox B1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Chick HoxB3: deduced amino-acid sequence and embryonic gene expression. Rex M, et al. Gene, 1994 Nov 18. PMID 7959024
  2. The nucleotide sequence of the cDNA encoding a chicken Deformed family homeobox gene, Chox-Z. Sasaki H, et al. Nucleic Acids Res, 1990 Jan 11. PMID 1968620, Free PMC Article
  3. Isolation and analysis of chick homeobox cDNA clones. Scotting PJ, et al. Nucleic Acids Res, 1990 Jul 11. PMID 1973835, Free PMC Article
  4. Conservation in the Hox code during morphological evolution. Gaunt SJ. Int J Dev Biol, 1994 Sep. PMID 7848839
  5. Chicken genomics resource: sequencing and annotation of 35,407 ESTs from single and multiple tissue cDNA libraries and CAP3 assembly of a chicken gene index. Carre W, et al. Physiol Genomics, 2006 May 16. PMID 16554550

See all (9) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
homeobox protein Hox-B3
Names
Homeobox protein Hox-B4
Homeobox protein Hox-Z
chox-2.7
homeo box B3
homeobox protein Hox-2.7

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001397895.1 → NP_001384824.1  homeobox protein Hox-B3

    Status: VALIDATED

    Source sequence(s)
    BI065824, BU202463, CR391614, JAENSK010000364, X52749, X80113
    UniProtKB/TrEMBL
    A0A1D5NXL9, A0A1D5NYH9, A0A1D5PBV1
    Conserved Domains (2) summary
    pfam00046
    Location:164 → 217
    Homeobox; Homeobox domain
    pfam13293
    Location:335 → 397
    DUF4074; Domain of unknown function (DUF4074)

RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052558.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    3412953..3472771
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040653083.2 → XP_040509017.1  homeobox protein Hox-B3 isoform X1

    Conserved Domains (2) summary
    pfam00046
    Location:165 → 218
    Homeobox; Homeobox domain
    pfam13293
    Location:336 → 398
    DUF4074; Domain of unknown function (DUF4074)

  2. XM_040653104.2 → XP_040509038.1  homeobox protein Hox-B3 isoform X2

    UniProtKB/TrEMBL
    A0A1D5NXL9, A0A1D5NYH9, A0A1D5PBV1
    Conserved Domains (2) summary
    pfam00046
    Location:164 → 217
    Homeobox; Homeobox domain
    pfam13293
    Location:335 → 397
    DUF4074; Domain of unknown function (DUF4074)

  3. XM_040653079.2 → XP_040509013.1  homeobox protein Hox-B3 isoform X1

    Conserved Domains (2) summary
    pfam00046
    Location:165 → 218
    Homeobox; Homeobox domain
    pfam13293
    Location:336 → 398
    DUF4074; Domain of unknown function (DUF4074)

  4. XM_040653081.2 → XP_040509015.1  homeobox protein Hox-B3 isoform X1

    Conserved Domains (2) summary
    pfam00046
    Location:165 → 218
    Homeobox; Homeobox domain
    pfam13293
    Location:336 → 398
    DUF4074; Domain of unknown function (DUF4074)

  5. XM_040653105.2 → XP_040509039.1  homeobox protein Hox-B3 isoform X2

    UniProtKB/TrEMBL
    A0A1D5NXL9, A0A1D5NYH9, A0A1D5PBV1
    Conserved Domains (2) summary
    pfam00046
    Location:164 → 217
    Homeobox; Homeobox domain
    pfam13293
    Location:335 → 397
    DUF4074; Domain of unknown function (DUF4074)

  6. XM_040653085.2 → XP_040509019.1  homeobox protein Hox-B3 isoform X1

    Conserved Domains (2) summary
    pfam00046
    Location:165 → 218
    Homeobox; Homeobox domain
    pfam13293
    Location:336 → 398
    DUF4074; Domain of unknown function (DUF4074)

  7. XM_040653099.2 → XP_040509033.1  homeobox protein Hox-B3 isoform X1

    Conserved Domains (2) summary
    pfam00046
    Location:165 → 218
    Homeobox; Homeobox domain
    pfam13293
    Location:336 → 398
    DUF4074; Domain of unknown function (DUF4074)

  8. XM_040653090.2 → XP_040509024.1  homeobox protein Hox-B3 isoform X1

    Conserved Domains (2) summary
    pfam00046
    Location:165 → 218
    Homeobox; Homeobox domain
    pfam13293
    Location:336 → 398
    DUF4074; Domain of unknown function (DUF4074)

  9. XM_046904325.1 → XP_046760281.1  homeobox protein Hox-B3 isoform X2

    UniProtKB/TrEMBL
    A0A1D5NXL9, A0A1D5NYH9, A0A1D5PBV1

  10. XM_040653095.2 → XP_040509029.1  homeobox protein Hox-B3 isoform X1

    Conserved Domains (2) summary
    pfam00046
    Location:165 → 218
    Homeobox; Homeobox domain
    pfam13293
    Location:336 → 398
    DUF4074; Domain of unknown function (DUF4074)

  11. XM_040653086.2 → XP_040509020.1  homeobox protein Hox-B3 isoform X1

    Conserved Domains (2) summary
    pfam00046
    Location:165 → 218
    Homeobox; Homeobox domain
    pfam13293
    Location:336 → 398
    DUF4074; Domain of unknown function (DUF4074)

  12. XM_040653106.2 → XP_040509040.1  homeobox protein Hox-B3 isoform X2

    UniProtKB/TrEMBL
    A0A1D5NXL9, A0A1D5NYH9, A0A1D5PBV1
    Conserved Domains (2) summary
    pfam00046
    Location:164 → 217
    Homeobox; Homeobox domain
    pfam13293
    Location:335 → 397
    DUF4074; Domain of unknown function (DUF4074)

  13. XM_040653096.2 → XP_040509030.1  homeobox protein Hox-B3 isoform X1

    Conserved Domains (2) summary
    pfam00046
    Location:165 → 218
    Homeobox; Homeobox domain
    pfam13293
    Location:336 → 398
    DUF4074; Domain of unknown function (DUF4074)

  14. XM_040653111.2 → XP_040509045.1  homeobox protein Hox-B3 isoform X2

    UniProtKB/TrEMBL
    A0A1D5NXL9, A0A1D5NYH9, A0A1D5PBV1
    Conserved Domains (2) summary
    pfam00046
    Location:164 → 217
    Homeobox; Homeobox domain
    pfam13293
    Location:335 → 397
    DUF4074; Domain of unknown function (DUF4074)

  15. XM_040653089.2 → XP_040509023.1  homeobox protein Hox-B3 isoform X1

    Conserved Domains (2) summary
    pfam00046
    Location:165 → 218
    Homeobox; Homeobox domain
    pfam13293
    Location:336 → 398
    DUF4074; Domain of unknown function (DUF4074)

  16. XM_040653107.2 → XP_040509041.1  homeobox protein Hox-B3 isoform X2

    UniProtKB/TrEMBL
    A0A1D5NXL9, A0A1D5NYH9, A0A1D5PBV1
    Related
    ENSGALP00010034731.1, ENSGALT00010057098.1
    Conserved Domains (2) summary
    pfam00046
    Location:164 → 217
    Homeobox; Homeobox domain
    pfam13293
    Location:335 → 397
    DUF4074; Domain of unknown function (DUF4074)

  17. XM_040653112.2 → XP_040509046.1  homeobox protein Hox-B3 isoform X2

    UniProtKB/TrEMBL
    A0A1D5NXL9, A0A1D5NYH9, A0A1D5PBV1
    Conserved Domains (2) summary
    pfam00046
    Location:164 → 217
    Homeobox; Homeobox domain
    pfam13293
    Location:335 → 397
    DUF4074; Domain of unknown function (DUF4074)

  18. XM_040653102.2 → XP_040509036.1  homeobox protein Hox-B3 isoform X1

    Conserved Domains (2) summary
    pfam00046
    Location:165 → 218
    Homeobox; Homeobox domain
    pfam13293
    Location:336 → 398
    DUF4074; Domain of unknown function (DUF4074)

  19. XM_040653101.2 → XP_040509035.1  homeobox protein Hox-B3 isoform X1

    Conserved Domains (2) summary
    pfam00046
    Location:165 → 218
    Homeobox; Homeobox domain
    pfam13293
    Location:336 → 398
    DUF4074; Domain of unknown function (DUF4074)

  20. XM_040653088.2 → XP_040509022.1  homeobox protein Hox-B3 isoform X1

    Conserved Domains (2) summary
    pfam00046
    Location:165 → 218
    Homeobox; Homeobox domain
    pfam13293
    Location:336 → 398
    DUF4074; Domain of unknown function (DUF4074)

  21. XM_040653098.2 → XP_040509032.1  homeobox protein Hox-B3 isoform X1

    Conserved Domains (2) summary
    pfam00046
    Location:165 → 218
    Homeobox; Homeobox domain
    pfam13293
    Location:336 → 398
    DUF4074; Domain of unknown function (DUF4074)

  22. XM_040653103.2 → XP_040509037.1  homeobox protein Hox-B3 isoform X1

    Conserved Domains (2) summary
    pfam00046
    Location:165 → 218
    Homeobox; Homeobox domain
    pfam13293
    Location:336 → 398
    DUF4074; Domain of unknown function (DUF4074)

  23. XM_040653084.2 → XP_040509018.1  homeobox protein Hox-B3 isoform X1

    Conserved Domains (2) summary
    pfam00046
    Location:165 → 218
    Homeobox; Homeobox domain
    pfam13293
    Location:336 → 398
    DUF4074; Domain of unknown function (DUF4074)

  24. XM_040653093.2 → XP_040509027.1  homeobox protein Hox-B3 isoform X1

    Conserved Domains (2) summary
    pfam00046
    Location:165 → 218
    Homeobox; Homeobox domain
    pfam13293
    Location:336 → 398
    DUF4074; Domain of unknown function (DUF4074)

  25. XM_025143947.3 → XP_024999715.1  homeobox protein Hox-B3 isoform X1

    Conserved Domains (2) summary
    pfam00046
    Location:165 → 218
    Homeobox; Homeobox domain
    pfam13293
    Location:336 → 398
    DUF4074; Domain of unknown function (DUF4074)

  26. XM_040653091.2 → XP_040509025.1  homeobox protein Hox-B3 isoform X1

    Conserved Domains (2) summary
    pfam00046
    Location:165 → 218
    Homeobox; Homeobox domain
    pfam13293
    Location:336 → 398
    DUF4074; Domain of unknown function (DUF4074)

  27. XM_015299430.4 → XP_015154916.1  homeobox protein Hox-B3 isoform X1

    Conserved Domains (2) summary
    pfam00046
    Location:165 → 218
    Homeobox; Homeobox domain
    pfam13293
    Location:336 → 398
    DUF4074; Domain of unknown function (DUF4074)

  28. XM_046904323.1 → XP_046760279.1  homeobox protein Hox-B3 isoform X2

    UniProtKB/TrEMBL
    A0A1D5NXL9, A0A1D5NYH9, A0A1D5PBV1

  29. XM_040653080.2 → XP_040509014.1  homeobox protein Hox-B3 isoform X1

    Conserved Domains (2) summary
    pfam00046
    Location:165 → 218
    Homeobox; Homeobox domain
    pfam13293
    Location:336 → 398
    DUF4074; Domain of unknown function (DUF4074)

  30. XM_040653092.2 → XP_040509026.1  homeobox protein Hox-B3 isoform X1

    Conserved Domains (2) summary
    pfam00046
    Location:165 → 218
    Homeobox; Homeobox domain
    pfam13293
    Location:336 → 398
    DUF4074; Domain of unknown function (DUF4074)

  31. XM_040653082.2 → XP_040509016.1  homeobox protein Hox-B3 isoform X1

    Conserved Domains (2) summary
    pfam00046
    Location:165 → 218
    Homeobox; Homeobox domain
    pfam13293
    Location:336 → 398
    DUF4074; Domain of unknown function (DUF4074)

  32. XM_025143944.3 → XP_024999712.1  homeobox protein Hox-B3 isoform X1

    Conserved Domains (2) summary
    pfam00046
    Location:165 → 218
    Homeobox; Homeobox domain
    pfam13293
    Location:336 → 398
    DUF4074; Domain of unknown function (DUF4074)

  33. XM_040653109.2 → XP_040509043.1  homeobox protein Hox-B3 isoform X2

    UniProtKB/TrEMBL
    A0A1D5NXL9, A0A1D5NYH9, A0A1D5PBV1
    Conserved Domains (2) summary
    pfam00046
    Location:164 → 217
    Homeobox; Homeobox domain
    pfam13293
    Location:335 → 397
    DUF4074; Domain of unknown function (DUF4074)

  34. XM_046904322.1 → XP_046760278.1  homeobox protein Hox-B3 isoform X1

  35. XM_040653110.2 → XP_040509044.1  homeobox protein Hox-B3 isoform X2

    UniProtKB/TrEMBL
    A0A1D5NXL9, A0A1D5NYH9, A0A1D5PBV1
    Conserved Domains (2) summary
    pfam00046
    Location:164 → 217
    Homeobox; Homeobox domain
    pfam13293
    Location:335 → 397
    DUF4074; Domain of unknown function (DUF4074)

  36. XM_025143948.3 → XP_024999716.1  homeobox protein Hox-B3 isoform X2

    UniProtKB/TrEMBL
    A0A1D5NXL9, A0A1D5NYH9, A0A1D5PBV1
    Conserved Domains (2) summary
    pfam00046
    Location:164 → 217
    Homeobox; Homeobox domain
    pfam13293
    Location:335 → 397
    DUF4074; Domain of unknown function (DUF4074)

  37. XM_040653108.2 → XP_040509042.1  homeobox protein Hox-B3 isoform X2

    UniProtKB/TrEMBL
    A0A1D5NXL9, A0A1D5NYH9, A0A1D5PBV1
    Conserved Domains (2) summary
    pfam00046
    Location:164 → 217
    Homeobox; Homeobox domain
    pfam13293
    Location:335 → 397
    DUF4074; Domain of unknown function (DUF4074)

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052599.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    4544868..4615245
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046933247.1 → XP_046789203.1  homeobox protein Hox-B3 isoform X1

  2. XM_046933245.1 → XP_046789201.1  homeobox protein Hox-B3 isoform X1

  3. XM_046933243.1 → XP_046789199.1  homeobox protein Hox-B3 isoform X1

  4. XM_046933269.1 → XP_046789225.1  homeobox protein Hox-B3 isoform X2

    UniProtKB/TrEMBL
    A0A1D5NXL9, A0A1D5NYH9, A0A1D5PBV1

  5. XM_046933250.1 → XP_046789206.1  homeobox protein Hox-B3 isoform X1

  6. XM_046933260.1 → XP_046789216.1  homeobox protein Hox-B3 isoform X1

  7. XM_046933249.1 → XP_046789205.1  homeobox protein Hox-B3 isoform X1

  8. XM_046933273.1 → XP_046789229.1  homeobox protein Hox-B3 isoform X2

    UniProtKB/TrEMBL
    A0A1D5NXL9, A0A1D5NYH9, A0A1D5PBV1

  9. XM_046933257.1 → XP_046789213.1  homeobox protein Hox-B3 isoform X1

  10. XM_046933256.1 → XP_046789212.1  homeobox protein Hox-B3 isoform X1

  11. XM_046933253.1 → XP_046789209.1  homeobox protein Hox-B3 isoform X1

  12. XM_046933275.1 → XP_046789231.1  homeobox protein Hox-B3 isoform X2

    UniProtKB/TrEMBL
    A0A1D5NXL9, A0A1D5NYH9, A0A1D5PBV1

  13. XM_046933263.1 → XP_046789219.1  homeobox protein Hox-B3 isoform X1

  14. XM_046933274.1 → XP_046789230.1  homeobox protein Hox-B3 isoform X2

    UniProtKB/TrEMBL
    A0A1D5NXL9, A0A1D5NYH9, A0A1D5PBV1

  15. XM_046933264.1 → XP_046789220.1  homeobox protein Hox-B3 isoform X1

  16. XM_046933262.1 → XP_046789218.1  homeobox protein Hox-B3 isoform X1

  17. XM_046933252.1 → XP_046789208.1  homeobox protein Hox-B3 isoform X1

  18. XM_046933241.1 → XP_046789197.1  homeobox protein Hox-B3 isoform X1

  19. XM_046933267.1 → XP_046789223.1  homeobox protein Hox-B3 isoform X2

    UniProtKB/TrEMBL
    A0A1D5NXL9, A0A1D5NYH9, A0A1D5PBV1

  20. XM_046933242.1 → XP_046789198.1  homeobox protein Hox-B3 isoform X1

  21. XM_046933266.1 → XP_046789222.1  homeobox protein Hox-B3 isoform X2

    UniProtKB/TrEMBL
    A0A1D5NXL9, A0A1D5NYH9, A0A1D5PBV1

  22. XM_046933244.1 → XP_046789200.1  homeobox protein Hox-B3 isoform X1

  23. XM_046933268.1 → XP_046789224.1  homeobox protein Hox-B3 isoform X2

    UniProtKB/TrEMBL
    A0A1D5NXL9, A0A1D5NYH9, A0A1D5PBV1

  24. XM_046933246.1 → XP_046789202.1  homeobox protein Hox-B3 isoform X1

  25. XM_046933258.1 → XP_046789214.1  homeobox protein Hox-B3 isoform X1

  26. XM_046933270.1 → XP_046789226.1  homeobox protein Hox-B3 isoform X2

    UniProtKB/TrEMBL
    A0A1D5NXL9, A0A1D5NYH9, A0A1D5PBV1

  27. XM_046933254.1 → XP_046789210.1  homeobox protein Hox-B3 isoform X1

  28. XM_046933271.1 → XP_046789227.1  homeobox protein Hox-B3 isoform X2

    UniProtKB/TrEMBL
    A0A1D5NXL9, A0A1D5NYH9, A0A1D5PBV1

  29. XM_046933248.1 → XP_046789204.1  homeobox protein Hox-B3 isoform X1

  30. XM_046933255.1 → XP_046789211.1  homeobox protein Hox-B3 isoform X1

  31. XM_046933265.1 → XP_046789221.1  homeobox protein Hox-B3 isoform X1

  32. XM_046933251.1 → XP_046789207.1  homeobox protein Hox-B3 isoform X1

  33. XM_046933261.1 → XP_046789217.1  homeobox protein Hox-B3 isoform X1

  34. XM_046933259.1 → XP_046789215.1  homeobox protein Hox-B3 isoform X1

  35. XM_046933272.1 → XP_046789228.1  homeobox protein Hox-B3 isoform X2

    UniProtKB/TrEMBL
    A0A1D5NXL9, A0A1D5NYH9, A0A1D5PBV1

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_204743.2: Suppressed sequence

    Description
    NM_204743.2: This RefSeq was removed because currently there is support for the protein but not for the transcript.
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P14840.1 GenPept UniProtKB/Swiss-Prot:P14840
P23682.2 GenPept UniProtKB/Swiss-Prot:P23682

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.