U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

RGN regucalcin [ Gallus gallus (chicken) ]

Gene ID: 395480, updated on 10-Oct-2024

Summary

Go to the top of the page Help
Official Symbol
RGNprovided by CGNC
Official Full Name
regucalcinprovided by CGNC
Primary source
CGNC:49339
See related
Ensembl:ENSGALG00010002634
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Also known as
GNL
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See RGN in Genome Data Viewer
Location:
chromosome: 1
Exon count:
10
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 1 NC_052532.1 (130223016..130243170, complement)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 1 NC_052573.1 (130178730..130198883, complement)

Chromosome 1 - NC_052532.1Genomic Context describing neighboring genes Neighboring gene GTP binding protein 6 (putative) Neighboring gene phosphatidylinositol specific phospholipase C X domain containing 1 Neighboring gene regucalcin like Neighboring gene jade family PHD finger 3 Neighboring gene uncharacterized LOC107051962 Neighboring gene RP2 activator of ARL3 GTPase

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. The gene of Ca2+-binding protein regucalcin is highly conserved in vertebrate species. Misawa H, et al. Int J Mol Med, 2000 Aug. PMID 10891565
  2. Small non-coding RNA profiling and the role of piRNA pathway genes in the protection of chicken primordial germ cells. Rengaraj D, et al. BMC Genomics, 2014 Sep 4. PMID 25185950, Free PMC Article
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
  4. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  5. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables enzyme regulator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables gluconolactonase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in L-ascorbic acid biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
regucalcin
Names
RC
gluconolactonase
NP_990060.2
XP_015133172.1
XP_015133173.4
XP_025011150.1
XP_046759802.1
XP_046762566.1
XP_046762567.1
XP_046762568.1
XP_046762569.1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_204729.2 → NP_990060.2  regucalcin

    Status: PROVISIONAL

    Source sequence(s)
    JAENSK010000025
    UniProtKB/Swiss-Prot
    Q9I923
    Conserved Domains (1) summary
    pfam08450
    Location:16 → 264
    SGL; SMP-30/Gluconolaconase/LRE-like region

RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052532.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    130223016..130243170 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046903846.1 → XP_046759802.1  regucalcin isoform X2

  2. XM_025155382.3 → XP_025011150.1  regucalcin isoform X1

    UniProtKB/Swiss-Prot
    Q9I923
    UniProtKB/TrEMBL
    A0A8V0XHM2
    Related
    ENSGALP00010003819.1, ENSGALT00010006116.1
    Conserved Domains (1) summary
    pfam08450
    Location:21 → 269
    SGL; SMP-30/Gluconolaconase/LRE-like region

  3. XM_015277686.4 → XP_015133172.1  regucalcin isoform X2

    UniProtKB/Swiss-Prot
    Q9I923
    Conserved Domains (1) summary
    pfam08450
    Location:16 → 264
    SGL; SMP-30/Gluconolaconase/LRE-like region

  4. XM_015277687.4 → XP_015133173.4  regucalcin isoform X3

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052573.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    130178730..130198883 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046906612.1 → XP_046762568.1  regucalcin isoform X2

  2. XM_046906610.1 → XP_046762566.1  regucalcin isoform X1

    UniProtKB/TrEMBL
    A0A8V0XHM2

  3. XM_046906611.1 → XP_046762567.1  regucalcin isoform X2

  4. XM_046906613.1 → XP_046762569.1  regucalcin isoform X3

Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9I923.1 GenPept UniProtKB/Swiss-Prot:Q9I923

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials