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SSBP3 single stranded DNA binding protein 3 [ Gallus gallus (chicken) ]

Gene ID: 395250, updated on 10-Oct-2024

Summary

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Symbol
SSBP3provided by CGNC
Full Name
single stranded DNA binding protein 3provided by CGNC
Primary source
CGNC:8192
See related
Ensembl:ENSGALG00010025422
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Also known as
SSDP
Annotation information
Annotation category: suggests misassembly
Orthologs
human mouse all
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Genomic context

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See SSBP3 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
20
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 8 NC_052539.1 (24858396..24909605, complement)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 8 NC_052580.1 (24870893..24922322, complement)

Chromosome 8 - NC_052539.1Genomic Context describing neighboring genes Neighboring gene CUB domain containing protein 2 Neighboring gene NADH-cytochrome b5 reductase-like Neighboring gene mitochondrial ribosomal protein L37 Neighboring gene uncharacterized LOC121111428 Neighboring gene acyl-CoA thioesterase 11

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Cloning and characterization of a novel sequence-specific single-stranded-DNA-binding protein. Bayarsaihan D, et al. Biochem J, 1998 Apr 15. PMID 9531483, Free PMC Article
  2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables single-stranded DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
single-stranded DNA-binding protein 3
Names
sequence-specific single-stranded-DNA-binding protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_204564.2 → NP_989895.1  single-stranded DNA-binding protein 3

    See identical proteins and their annotated locations for NP_989895.1

    Status: VALIDATED

    Source sequence(s)
    JAENSK010000239
    UniProtKB/Swiss-Prot
    Q98948
    UniProtKB/TrEMBL
    A0A8V1A7N0
    Related
    ENSGALP00010038343.1, ENSGALT00010062062.1
    Conserved Domains (2) summary
    smart00667
    Location:17 → 43
    LisH; Lissencephaly type-1-like homology motif
    pfam04503
    Location:81 → 345
    SSDP; Single-stranded DNA binding protein, SSDP

RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052539.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    24858396..24909605 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046944249.1 → XP_046800205.1  single-stranded DNA-binding protein 3 isoform X14

  2. XM_046944247.1 → XP_046800203.1  single-stranded DNA-binding protein 3 isoform X13

  3. XM_046944245.1 → XP_046800201.1  single-stranded DNA-binding protein 3 isoform X12

    Conserved Domains (1) summary
    pfam04503
    Location:1 → 255
    SSDP; Single-stranded DNA binding protein, SSDP

  4. XM_025152748.3 → XP_025008516.1  single-stranded DNA-binding protein 3 isoform X8

    UniProtKB/TrEMBL
    A0A8V1A2W8
    Related
    ENSGALP00010038360.1, ENSGALT00010062079.1
    Conserved Domains (2) summary
    smart00667
    Location:17 → 43
    LisH; Lissencephaly type-1-like homology motif
    pfam04503
    Location:90 → 308
    SSDP; Single-stranded DNA binding protein, SSDP

  5. XM_040704489.2 → XP_040560423.1  single-stranded DNA-binding protein 3 isoform X7

    Conserved Domains (2) summary
    smart00667
    Location:17 → 43
    LisH; Lissencephaly type-1-like homology motif
    pfam04503
    Location:90 → 316
    SSDP; Single-stranded DNA binding protein, SSDP

  6. XM_046944241.1 → XP_046800197.1  single-stranded DNA-binding protein 3 isoform X6

    UniProtKB/TrEMBL
    A0A8V1A576
    Related
    ENSGALP00010038356.1, ENSGALT00010062075.1

  7. XM_040704488.2 → XP_040560422.1  single-stranded DNA-binding protein 3 isoform X4

    Conserved Domains (2) summary
    smart00667
    Location:17 → 43
    LisH; Lissencephaly type-1-like homology motif
    TIGR01628
    Location:121 → 240
    PABP-1234; polyadenylate binding protein, human types 1, 2, 3, 4 family

  8. XM_015290947.4 → XP_015146433.1  single-stranded DNA-binding protein 3 isoform X5

    Conserved Domains (2) summary
    smart00667
    Location:17 → 43
    LisH; Lissencephaly type-1-like homology motif
    pfam04503
    Location:81 → 338
    SSDP; Single-stranded DNA binding protein, SSDP

  9. XM_040704487.2 → XP_040560421.1  single-stranded DNA-binding protein 3 isoform X3

    UniProtKB/TrEMBL
    A0A8V0ZXM6
    Related
    ENSGALP00010038347.1, ENSGALT00010062066.1
    Conserved Domains (2) summary
    smart00667
    Location:17 → 43
    LisH; Lissencephaly type-1-like homology motif
    pfam04503
    Location:81 → 346
    SSDP; Single-stranded DNA binding protein, SSDP

  10. XM_015290944.4 → XP_015146430.1  single-stranded DNA-binding protein 3 isoform X2

    UniProtKB/TrEMBL
    A0A1D5PX87
    Conserved Domains (2) summary
    smart00667
    Location:17 → 43
    LisH; Lissencephaly type-1-like homology motif
    pfam04503
    Location:81 → 365
    SSDP; Single-stranded DNA binding protein, SSDP

  11. XM_040704486.2 → XP_040560420.1  single-stranded DNA-binding protein 3 isoform X1

    UniProtKB/TrEMBL
    A0A8V1A572
    Related
    ENSGALP00010038351.1, ENSGALT00010062070.1
    Conserved Domains (2) summary
    smart00667
    Location:17 → 43
    LisH; Lissencephaly type-1-like homology motif
    TIGR01628
    Location:151 → 270
    PABP-1234; polyadenylate binding protein, human types 1, 2, 3, 4 family

  12. XM_046944242.1 → XP_046800198.1  single-stranded DNA-binding protein 3 isoform X9

  13. XM_046944248.1 → XP_046800204.1  single-stranded DNA-binding protein 3 isoform X13

  14. XM_046944246.1 → XP_046800202.1  single-stranded DNA-binding protein 3 isoform X12

    Conserved Domains (1) summary
    pfam04503
    Location:1 → 255
    SSDP; Single-stranded DNA binding protein, SSDP

  15. XM_046944244.1 → XP_046800200.1  single-stranded DNA-binding protein 3 isoform X11

  16. XM_046944243.1 → XP_046800199.1  single-stranded DNA-binding protein 3 isoform X10

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052580.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    24870893..24922322 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046922302.1 → XP_046778258.1  single-stranded DNA-binding protein 3 isoform X13

  2. XM_046922300.1 → XP_046778256.1  single-stranded DNA-binding protein 3 isoform X12

    Conserved Domains (1) summary
    pfam04503
    Location:1 → 255
    SSDP; Single-stranded DNA binding protein, SSDP

  3. XM_046922295.1 → XP_046778251.1  single-stranded DNA-binding protein 3 isoform X8

    UniProtKB/TrEMBL
    A0A8V1A2W8

  4. XM_046922294.1 → XP_046778250.1  single-stranded DNA-binding protein 3 isoform X7

  5. XM_046922293.1 → XP_046778249.1  single-stranded DNA-binding protein 3 isoform X6

    UniProtKB/TrEMBL
    A0A8V1A576

  6. XM_046922291.1 → XP_046778247.1  single-stranded DNA-binding protein 3 isoform X4

  7. XM_046922292.1 → XP_046778248.1  single-stranded DNA-binding protein 3 isoform X5

  8. XM_046922290.1 → XP_046778246.1  single-stranded DNA-binding protein 3 isoform X3

    UniProtKB/TrEMBL
    A0A8V0ZXM6

  9. XM_046922289.1 → XP_046778245.1  single-stranded DNA-binding protein 3 isoform X2

  10. XM_046922288.1 → XP_046778244.1  single-stranded DNA-binding protein 3 isoform X1

    UniProtKB/TrEMBL
    A0A8V1A572

  11. XM_046922297.1 → XP_046778253.1  single-stranded DNA-binding protein 3 isoform X9

  12. XM_046922303.1 → XP_046778259.1  single-stranded DNA-binding protein 3 isoform X13

  13. XM_046922301.1 → XP_046778257.1  single-stranded DNA-binding protein 3 isoform X12

    Conserved Domains (1) summary
    pfam04503
    Location:1 → 255
    SSDP; Single-stranded DNA binding protein, SSDP

  14. XM_046922299.1 → XP_046778255.1  single-stranded DNA-binding protein 3 isoform X11

  15. XM_046922298.1 → XP_046778254.1  single-stranded DNA-binding protein 3 isoform X10

Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q98948.3 GenPept UniProtKB/Swiss-Prot:Q98948

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