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FAT4 FAT atypical cadherin 4 [ Gallus gallus (chicken) ]

Gene ID: 395166, updated on 17-Aug-2024

Summary

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Official Symbol
FAT4provided by CGNC
Official Full Name
FAT atypical cadherin 4provided by CGNC
Primary source
CGNC:8963
See related
Ensembl:ENSGALG00010005029
Gene type
protein coding
RefSeq status
MODEL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Also known as
FatJ
Orthologs
human mouse all
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Genomic context

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See FAT4 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
17
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 4 NC_052535.1 (52022199..52159072, complement)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 4 NC_052576.1 (52025140..52162020, complement)

Chromosome 4 - NC_052535.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107051798 Neighboring gene uncharacterized LOC121110686 Neighboring gene uncharacterized LOC112532299 Neighboring gene uncharacterized LOC124418369 Neighboring gene uncharacterized LOC121110697 Neighboring gene uncharacterized LOC121110698

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. FatJ acts via the Hippo mediator Yap1 to restrict the size of neural progenitor cell pools. Van Hateren NJ, et al. Development, 2011 May. PMID 21521736, Free PMC Article
  2. Identification of a nonchordate-type classic cadherin in vertebrates: chicken Hz-cadherin is expressed in horizontal cells of the neural retina and contains a nonchordate-specific domain complex. Tanabe K, et al. Dev Dyn, 2004 Apr. PMID 15042713
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in homophilic cell adhesion via plasma membrane adhesion molecules IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell-cell junction IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protocadherin Fat 4
Names
FAT tumor suppressor homolog 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052535.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    52022199..52159072 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015276389.4 → XP_015131875.2  protocadherin Fat 4

    UniProtKB/TrEMBL
    A0A8V0XRC0
    Related
    ENSGALP00010006638.1, ENSGALT00010011853.1
    Conserved Domains (4) summary
    cd11304
    Location:2195 → 2290
    Cadherin_repeat; Cadherin tandem repeat domain
    smart00282
    Location:4283 → 4411
    LamG; Laminin G domain
    cd00054
    Location:3900 → 3936
    EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
    cd00110
    Location:4015 → 4178
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052576.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    52025140..52162020 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040670434.2 → XP_040526368.1  protocadherin Fat 4

    UniProtKB/TrEMBL
    A0A8V0XRC0
    Conserved Domains (4) summary
    cd11304
    Location:2195 → 2290
    Cadherin_repeat; Cadherin tandem repeat domain
    smart00282
    Location:4283 → 4411
    LamG; Laminin G domain
    cd00054
    Location:3900 → 3936
    EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
    cd00110
    Location:4015 → 4178
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
Nucleotide Protein
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