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CRMP1 collapsin response mediator protein 1 [ Gallus gallus (chicken) ]

Gene ID: 395156, updated on 10-Oct-2024

Summary

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Symbol
CRMP1provided by CGNC
Full Name
collapsin response mediator protein 1provided by CGNC
Primary source
CGNC:49192
See related
Ensembl:ENSGALG00010011345
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Also known as
CRMP1B
Orthologs
human mouse all
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Genomic context

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See CRMP1 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
16
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 4 NC_052535.1 (78732821..78777501, complement)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 4 NC_052576.1 (78711438..78756051, complement)

Chromosome 4 - NC_052535.1Genomic Context describing neighboring genes Neighboring gene EvC ciliary complex subunit 2 Neighboring gene EvC ciliary complex subunit 1 Neighboring gene chromosome 4 open reading frame, human C4orf50 Neighboring gene microRNA 1701 Neighboring gene janus kinase and microtubule interacting protein 1 Neighboring gene uncharacterized LOC112532319

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Axonal morphogenesis controlled by antagonistic roles of two CRMP subtypes in microtubule organization. Yuasa-Kawada J, et al. Eur J Neurosci, 2003 Jun. PMID 12814366
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
dihydropyrimidinase-related protein 1
Names
collapsin response mediator protein-1B

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_204495.2 → NP_989826.1  dihydropyrimidinase-related protein 1

    See identical proteins and their annotated locations for NP_989826.1

    Status: PROVISIONAL

    Source sequence(s)
    JAENSK010000074
    UniProtKB/TrEMBL
    A0A1L1RTI1, A0A8V0YHD8, Q71SG3
    Related
    ENSGALP00010015447.1, ENSGALT00010027144.1
    Conserved Domains (1) summary
    cd01314
    Location:17 → 466
    D-HYD; D-hydantoinases (D-HYD) also called dihydropyrimidases (DHPase) and related proteins; DHPases are a family of enzymes that catalyze the reversible hydrolytic ring opening of the amide bond in five- or six-membered cyclic diamides, like dihydropyrimidine ...

RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052535.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    78732821..78777501 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015285727.4 → XP_015141213.1  dihydropyrimidinase-related protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A8V0YHD8, Q71SG4
    Related
    ENSGALP00010015454.1, ENSGALT00010027151.1
    Conserved Domains (1) summary
    cd01314
    Location:128 → 577
    D-HYD; D-hydantoinases (D-HYD) also called dihydropyrimidases (DHPase) and related proteins; DHPases are a family of enzymes that catalyze the reversible hydrolytic ring opening of the amide bond in five- or six-membered cyclic diamides, like dihydropyrimidine ...

  2. XM_040698679.2 → XP_040554613.1  dihydropyrimidinase-related protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A8V0YHD8
    Related
    ENSGALP00010015432.1, ENSGALT00010027125.1
    Conserved Domains (1) summary
    cd01314
    Location:37 → 486
    D-HYD; D-hydantoinases (D-HYD) also called dihydropyrimidases (DHPase) and related proteins; DHPases are a family of enzymes that catalyze the reversible hydrolytic ring opening of the amide bond in five- or six-membered cyclic diamides, like dihydropyrimidine ...

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052576.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    78711438..78756051 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046915426.1 → XP_046771382.1  dihydropyrimidinase-related protein 1 isoform X1

    UniProtKB/TrEMBL
    Q71SG4
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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