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syap1 synapse associated protein 1 [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 394923, updated on 4-Nov-2024

Summary

Official Symbol
syap1provided by Xenbase
Official Full Name
synapse associated protein 1provided by Xenbase
Primary source
Xenbase:XB-GENE-5952691
See related
Ensembl:ENSXETG00000008966 AllianceGenome:Xenbase:XB-GENE-5952691
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Also known as
pro3113
Summary
Orthologous to human SYAP1 (synapse associated protein 1). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
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Genomic context

See syap1 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
9
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 2 NC_030678.2 (94590480..94606570, complement)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 2 NC_030678.1 (90481742..90497881, complement)

Chromosome 2 - NC_030678.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC116408855 Neighboring gene RAS p21 protein activator 4 Neighboring gene polymerase (RNA) II (DNA directed) polypeptide J, 13.3kDa Neighboring gene taxilin gamma Neighboring gene retinoblastoma binding protein 7

Genomic regions, transcripts, and products

General protein information

Preferred Names
synapse-associated protein 1
Names
synapse associated protein 1, SAP47 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_203973.1NP_989304.1  synapse-associated protein 1

    See identical proteins and their annotated locations for NP_989304.1

    Status: PROVISIONAL

    Source sequence(s)
    BC064154
    UniProtKB/TrEMBL
    A0A6I8RFN8, Q6P379
    Related
    ENSXETP00000080165.2, ENSXETT00000073951.2
    Conserved Domains (2) summary
    smart00751
    Location:173223
    BSD; domain in transcription factors and synapse-associated proteins
    pfam07222
    Location:259364
    PBP_sp32; Proacrosin binding protein sp32

RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030678.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    94590480..94606570 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)