rbm14 RNA binding motif protein 14 [Xenopus tropicalis (tropical clawed frog)] - Gene

Summary

Official Symbol: rbm14provided by Xenbase
Official Full Name: RNA binding motif protein 14provided by Xenbase
Primary source: Xenbase:XB-GENE-491627
See related: Ensembl:ENSXETG00000026650 AllianceGenome:Xenbase:XB-GENE-491627
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Xenopus tropicalis
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Also known as: sip; coaa; psp2; sytip1; tmem137
Summary: Predicted to enable RNA binding activity. Predicted to be involved in mRNA splicing, via spliceosome. Predicted to be active in nuclear speck. Orthologous to human RBM14 (RNA binding motif protein 14). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

Location:: chromosome: 4

Exon count:: 3

Annotation release	Status	Assembly	Chr	Location
104	current	UCB_Xtro_10.0 (GCF_000004195.4)	4	NC_030680.2 (39195914..39202873)
103	previous assembly	Xenopus_tropicalis_v9.1 (GCF_000004195.3)	4	NC_030680.1 (36770739..36777707)

Chromosome 4 - NC_030680.2 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by Xenbase

Function	Evidence Code	Pubs
enables RNA binding	IBA Inferred from Biological aspect of Ancestor more info
enables RNA binding	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
involved_in mRNA splicing, via spliceosome	IBA Inferred from Biological aspect of Ancestor more info

Component	Evidence Code	Pubs
is_active_in nuclear speck	IBA Inferred from Biological aspect of Ancestor more info

General protein information

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Preferred Names: RNA-binding protein 14

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_203719.1 → NP_989050.1 RNA-binding protein 14

See identical proteins and their annotated locations for NP_989050.1

Status: PROVISIONAL

Source sequence(s)

BC061344

UniProtKB/TrEMBL

A0A6I8PSM7, Q6P885

Related

ENSXETP00000112633.1, ENSXETT00000108940.1

Conserved Domains (2) summary

cd12608
Location:8 → 76

RRM1_CoAA; RNA recognition motif 1 in vertebrate RRM-containing coactivator activator/modulator (CoAA)

cd12609
Location:84 → 151

RRM2_CoAA; RNA recognition motif 2 in vertebrate RRM-containing coactivator activator/modulator (CoAA)

RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

NC_030680.2 Reference UCB_Xtro_10.0 Primary Assembly

Range

39195914..39202873

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_012960731.3 → XP_012816185.1 RNA-binding protein 14 isoform X1

UniProtKB/TrEMBL

A0A8J0SKU5

Conserved Domains (2) summary

cd12608
Location:8 → 76

RRM1_CoAA; RNA recognition motif 1 in vertebrate RRM-containing coactivator activator/modulator (CoAA)

cl17169
Location:84 → 118

RRM_SF; RNA recognition motif (RRM) superfamily