sec13 SEC13 homolog, nuclear pore and COPII coat complex component [Xenopus tropicalis (tropical clawed frog)] - Gene

Summary

Official Symbol: sec13provided by Xenbase
Official Full Name: SEC13 homolog, nuclear pore and COPII coat complex componentprovided by Xenbase
Primary source: Xenbase:XB-GENE-944452
See related: Ensembl:ENSXETG00000001453 AllianceGenome:Xenbase:XB-GENE-944452
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Xenopus tropicalis
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Summary: Predicted to enable structural molecule activity. Predicted to act upstream of or within mRNA transport and protein transport. Predicted to be located in lysosomal membrane. Predicted to be part of nuclear pore. Orthologous to human SEC13 (SEC13 homolog, nuclear pore and COPII coat complex component). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 4

Exon count:: 9

Annotation release	Status	Assembly	Chr	Location
104	current	UCB_Xtro_10.0 (GCF_000004195.4)	4	NC_030680.2 (131800349..131811714, complement)
103	previous assembly	Xenopus_tropicalis_v9.1 (GCF_000004195.3)	4	NC_030680.1 (121362661..121373860, complement)

Chromosome 4 - NC_030680.2 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by Xenbase

Function	Evidence Code	Pubs
enables structural molecule activity	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
acts_upstream_of_or_within mRNA transport	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within protein transport	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
located_in lysosomal membrane	IEA Inferred from Electronic Annotation more info
located_in lysosome	IEA Inferred from Electronic Annotation more info
part_of nuclear pore	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: protein SEC13 homolog

Names: SEC13 homolog, nuclear pore and COPII coating complex component

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_203636.1 → NP_988967.1 protein SEC13 homolog

See identical proteins and their annotated locations for NP_988967.1

Status: PROVISIONAL

Source sequence(s)

BC061419

UniProtKB/TrEMBL

A0A803JBF6, F6PLC0, F7C751, Q6P812

Related

ENSXETP00000003059.3, ENSXETT00000003059.5

Conserved Domains (2) summary

sd00039
Location:61 → 101

7WD40; WD40 repeat [structural motif]

cl29593
Location:10 → 288

WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...