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myf5 myogenic factor 5 [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 394529, updated on 17-Aug-2024

Summary

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Official Symbol
myf5provided by Xenbase
Official Full Name
myogenic factor 5provided by Xenbase
Primary source
Xenbase:XB-GENE-493550
See related
Ensembl:ENSXETG00000014520
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Also known as
Xmyf5; myf-5; Xmyf-5
Orthologs
human mouse all
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Genomic context

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See myf5 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
3
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 3 NC_030679.2 (52543905..52547076)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 3 NC_030679.1 (43006190..43009332)

Chromosome 3 - NC_030679.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC116409732 Neighboring gene myogenic factor 6 Neighboring gene lin-7 homolog A Neighboring gene acyl-CoA synthetase short chain family member 3 Neighboring gene protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Cloning and characterisation of Myf5 and MyoD orthologues in Xenopus tropicalis. Fisher ME, et al. Biol Cell, 2003 Nov. PMID 14630393
  2. A study of mesoderm patterning through the analysis of the regulation of Xmyf-5 expression. Polli M, et al. Development, 2002 Jun. PMID 12050139
  3. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  5. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Cloning and characterization of Xenopus MYF5.
    Title: Cloning and characterisation of Myf5 and MyoD orthologues in Xenopus tropicalis.
Submit: New GeneRIF Correction

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
  
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within cell differentiation IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within muscle organ development IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
myogenic factor 5

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_203601.1 → NP_988932.1  myogenic factor 5

    See identical proteins and their annotated locations for NP_988932.1

    Status: PROVISIONAL

    Source sequence(s)
    BC061421
    UniProtKB/TrEMBL
    F6SBB9, F7BCT0, Q7T108, Q8QG50
    Related
    ENSXETP00000031778.3, ENSXETT00000031778.5
    Conserved Domains (3) summary
    smart00520
    Location:1 → 88
    BASIC; Basic domain in HLH proteins of MYOD family
    pfam12232
    Location:143 → 214
    Myf5; Myogenic determination factor 5
    cd18937
    Location:83 → 146
    bHLH_TS_Myf5; basic helix-loop-helix (bHLH) domain found in myogenic factor 5 (Myf-5) and similar proteins

RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030679.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    52543905..52547076
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials