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sema5b.S semaphorin 5B S homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 379681, updated on 18-Sep-2024

Summary

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Official Symbol
sema5b.S
Official Full Name
semaphorin 5B S homeolog
Primary source
Xenbase:XB-GENE-959732
Locus tag
XELAEV_18046934mg
See related
EnsemblRapid:ENSXLAG00005016420
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
semg; semag; sema5b; sema5b.L
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Genomic context

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See sema5b.S in Genome Data Viewer
Location:
chromosome: 9_10S
Exon count:
25
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 9_10S NC_054388.1 (48869269..48986118)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 9_10S NC_030741.1 (42199886..42322290)

Chromosome 9_10S - NC_054388.1Genomic Context describing neighboring genes Neighboring gene SEC22 homolog A, vesicle trafficking protein S homeolog Neighboring gene protein disulfide isomerase family A member 5 S homeolog Neighboring gene solute carrier family 49 member 4 S homeolog Neighboring gene HSPB1-associated protein 1-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC68835

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables chemorepellent activity IEA
Inferred from Electronic Annotation
more info
  
enables semaphorin receptor binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within axon guidance IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within cell differentiation IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within negative regulation of axon extension involved in axon guidance IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within nervous system development IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within neural crest cell migration IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within positive regulation of cell migration IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within semaphorin-plexin signaling pathway IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within system development IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
semaphorin 5B S homeolog
Names
sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5B L homeolog
sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5B S homeolog
semaphorin-5B

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001086522.1 → NP_001079991.1  semaphorin 5B S homeolog precursor

    See identical proteins and their annotated locations for NP_001079991.1

    Status: PROVISIONAL

    Source sequence(s)
    BC059288
    UniProtKB/TrEMBL
    A0A974BU98, Q6PCK8
    Related
    ENSXLAP00005048365.1, ENSXLAT00005049480.1
    Conserved Domains (3) summary
    cd11264
    Location:58 → 494
    Sema_5B; The Sema domain, a protein interacting module, of semaphorin 5B (Sema5B)
    smart00209
    Location:794 → 846
    TSP1; Thrombospondin type 1 repeats
    pfam01437
    Location:495 → 542
    PSI; Plexin repeat

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054388.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    48869269..48986118
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041577632.1 → XP_041433566.1  semaphorin 5B S homeolog isoform X1

    UniProtKB/TrEMBL
    A0A974BU98, Q6PCK8
    Conserved Domains (3) summary
    cd11264
    Location:58 → 494
    Sema_5B; The Sema domain, a protein interacting module, of semaphorin 5B (Sema5B)
    smart00209
    Location:794 → 846
    TSP1; Thrombospondin type 1 repeats
    pfam01437
    Location:495 → 542
    PSI; Plexin repeat

  2. XM_041577633.1 → XP_041433567.1  semaphorin 5B S homeolog isoform X1

    UniProtKB/TrEMBL
    A0A974BU98, Q6PCK8
    Conserved Domains (3) summary
    cd11264
    Location:58 → 494
    Sema_5B; The Sema domain, a protein interacting module, of semaphorin 5B (Sema5B)
    smart00209
    Location:794 → 846
    TSP1; Thrombospondin type 1 repeats
    pfam01437
    Location:495 → 542
    PSI; Plexin repeat
Nucleotide Protein Strain
Heading Accession and Version

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