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ccnf.L cyclin F L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 379591, updated on 17-Aug-2024

Summary

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Official Symbol
ccnf.L
Official Full Name
cyclin F L homeolog
Primary source
Xenbase:XB-GENE-963734
Locus tag
XELAEV_18045390mg
See related
EnsemblRapid:ENSXLAG00005018440
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
ccnf; Fbxo1; Cyclin-F
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Genomic context

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Location:
chromosome: 9_10L
Exon count:
17
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 9_10L NC_054387.1 (114531357..114544278, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 9_10L NC_030740.1 (103922459..103935386, complement)

Chromosome 9_10L - NC_054387.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC121398023 Neighboring gene uncharacterized LOC108701612 Neighboring gene tubulin epsilon and delta complex 2 L homeolog Neighboring gene ankyrin repeat and fibronectin type III domain containing 1 like L homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC69175

Gene Ontology Provided by Xenbase

Process Evidence Code Pubs
acts_upstream_of_or_within SCF-dependent proteasomal ubiquitin-dependent protein catabolic process ISS
Inferred from Sequence or Structural Similarity
more info
  
acts_upstream_of_or_within cell division IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within negative regulation of centrosome duplication ISS
Inferred from Sequence or Structural Similarity
more info
  
acts_upstream_of_or_within protein ubiquitination ISS
Inferred from Sequence or Structural Similarity
more info
  
Component Evidence Code Pubs
part_of SCF ubiquitin ligase complex ISS
Inferred from Sequence or Structural Similarity
more info
  
located_in centriole IEA
Inferred from Electronic Annotation
more info
  
located_in centriole ISS
Inferred from Sequence or Structural Similarity
more info
  
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  
located_in cytoskeleton IEA
Inferred from Electronic Annotation
more info
  
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  
located_in nucleus ISS
Inferred from Sequence or Structural Similarity
more info
  
located_in perinuclear region of cytoplasm IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
cyclin-F

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001086432.1 → NP_001079901.1  cyclin-F

    See identical proteins and their annotated locations for NP_001079901.1

    Status: PROVISIONAL

    Source sequence(s)
    BC056134
    UniProtKB/Swiss-Prot
    Q7T0L6
    UniProtKB/TrEMBL
    A0A974C0V8
    Related
    ENSXLAP00005054507.1, ENSXLAT00005055681.1
    Conserved Domains (4) summary
    smart00256
    Location:34 → 74
    FBOX; A Receptor for Ubiquitination Targets
    sd00010
    Location:87 → 111
    SLR; SLR repeat [structural motif]
    pfam00134
    Location:308 → 412
    Cyclin_N; Cyclin, N-terminal domain
    pfam02984
    Location:430 → 533
    Cyclin_C; Cyclin, C-terminal domain

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054387.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    114531357..114544278 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018234042.2 → XP_018089531.1  cyclin-F isoform X1

    UniProtKB/TrEMBL
    A0A8J0TRG8, A0A974C0V8
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q7T0L6.1 GenPept UniProtKB/Swiss-Prot:Q7T0L6

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials