ssb.L Sjogren syndrome antigen B L homeolog [Xenopus laevis (African clawed frog)] - Gene

Summary

Official Symbol: ssb.L
Official Full Name: Sjogren syndrome antigen B L homeolog
Primary source: Xenbase:XB-GENE-866058
Locus tag: XELAEV_18044670mg
See related: EnsemblRapid:ENSXLAG00005032668 AllianceGenome:Xenbase:XB-GENE-866058
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Xenopus laevis
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as: ssb; lab1; larp3; ssb-a; ssb-b
Summary: Predicted to enable mRNA binding activity. Predicted to act upstream of or within tRNA processing. Predicted to be located in nucleus. Predicted to be part of ribonucleoprotein complex. Orthologous to human SSB (small RNA binding exonuclease protection factor La). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

Location:: chromosome: 9_10L

Exon count:: 14

Annotation release	Status	Assembly	Chr	Location
101	current	Xenopus_laevis_v10.1 (GCF_017654675.1)	9_10L	NC_054387.1 (75294748..75305800)
100	previous assembly	Xenopus_laevis_v2 (GCF_001663975.1)	9_10L	NC_030740.1 (64789428..64800461)

Chromosome 9_10L - NC_054387.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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Gene Ontology Provided by Xenbase

Function	Evidence Code	Pubs
enables RNA binding	IEA Inferred from Electronic Annotation more info
enables mRNA binding	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
acts_upstream_of_or_within RNA processing	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within tRNA processing	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
located_in nucleus	IEA Inferred from Electronic Annotation more info
part_of ribonucleoprotein complex	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: lupus La protein homolog B

Names: Sjogren syndrome antigen B (autoantigen La); la autoantigen homolog B; la ribonucleoprotein B

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001086168.1 → NP_001079637.1 lupus La protein homolog B

See identical proteins and their annotated locations for NP_001079637.1

Status: PROVISIONAL

Source sequence(s)

BC108782

UniProtKB/Swiss-Prot

P28049

UniProtKB/TrEMBL

Q32N81

Conserved Domains (3) summary

cd08028
Location:11 → 90

LARP_3; La RNA-binding domain of La-related protein 3

cd12291
Location:111 → 182

RRM1_La; RNA recognition motif 1 in La autoantigen (La or LARP3) and similar proteins

cd12541
Location:230 → 306

RRM2_La; RNA recognition motif 2 in La autoantigen (La or LARP3) and similar proteins