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hdac9.S histone deacetylase 9 S homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 378615, updated on 17-Aug-2024

Summary

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Official Symbol
hdac9.S
Official Full Name
histone deacetylase 9 S homeolog
Primary source
Xenbase:XB-GENE-865808
Locus tag
XELAEV_18033026mg
See related
EnsemblRapid:ENSXLAG00005026142
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
MITR; hdrp; hdac9; hdac9-A
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Genomic context

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See hdac9.S in Genome Data Viewer
Location:
chromosome: 6S
Exon count:
14
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 6S NC_054382.1 (30524447..30798301)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 6S NC_030735.1 (30157897..30270926)

Chromosome 6S - NC_054382.1Genomic Context describing neighboring genes Neighboring gene aryl hydrocarbon receptor S homeolog Neighboring gene sorting nexin 13 S homeolog Neighboring gene twist family bHLH transcription factor 1 S homeolog Neighboring gene Fer3-like bHLH transcription factor S homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. MEF-2 function is modified by a novel co-repressor, MITR. Sparrow DB, et al. EMBO J, 1999 Sep 15. PMID 10487760, Free PMC Article
  2. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables histone deacetylase activity IEA
Inferred from Electronic Annotation
more info
  
enables hydrolase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within chromatin organization IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
histone deacetylase 9
Names
MEF2-interacting transcription repressor MITR
histone deacetylase 9, MITR protein
histone deacetylase-related protein
NP_001079307.1
XP_018124043.1
XP_041423000.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001085838.1 → NP_001079307.1  histone deacetylase 9

    See identical proteins and their annotated locations for NP_001079307.1

    Status: PROVISIONAL

    Source sequence(s)
    Z97214
    UniProtKB/TrEMBL
    B7ZSF1
    Related
    ENSXLAP00005077976.1, ENSXLAT00005079567.1
    Conserved Domains (1) summary
    cd10163
    Location:34 → 125
    ClassIIa_HDAC9_Gln-rich-N; Glutamine-rich N-terminal helical domain of HDAC9, a Class IIa histone deacetylase

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054382.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    30524447..30798301
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041567066.1 → XP_041423000.1  histone deacetylase 9 isoform X2

    UniProtKB/Swiss-Prot
    Q9YGY4
    UniProtKB/TrEMBL
    A0A8J1L0B9, A0A974CIS8
    Conserved Domains (1) summary
    cd10163
    Location:63 → 154
    ClassIIa_HDAC9_Gln-rich-N; Glutamine-rich N-terminal helical domain of HDAC9, a Class IIa histone deacetylase

  2. XM_018268554.2 → XP_018124043.1  histone deacetylase 9 isoform X1

    UniProtKB/Swiss-Prot
    Q9YGY4
    UniProtKB/TrEMBL
    A0A8J0VKW5, A0A974CIS8
    Related
    ENSXLAP00005077725.1, ENSXLAT00005079316.1
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9YGY4.2 GenPept UniProtKB/Swiss-Prot:Q9YGY4

Gene LinkOut

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