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YAB2 Plant-specific transcription factor YABBY family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 3766682, updated on 18-Sep-2024

Summary

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Official Symbol
YAB2
Official Full Name
Plant-specific transcription factor YABBY family protein
Primary source
TAIR:AT1G08465
Locus tag
AT1G08465
See related
Araport:AT1G08465
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T27G7.15; YABBY2
Summary
Member of the YABBY family of Arabidopsis proteins involved in the abaxial cell fate specification in lateral organs
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Genomic context

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See YAB2 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
6
Sequence:
Chromosome: 1; NC_003070.9 (2675813..2679824)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene calreticulin 3 Neighboring gene histone deacetylase 8 Neighboring gene strictosidine synthase-like 3 Neighboring gene succinate dehydrogenase subunit Neighboring gene chloroplastic NIFS-like cysteine desulfurase

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Members of the YABBY gene family specify abaxial cell fate in Arabidopsis. Siegfried KR, et al. Development, 1999 Sep. PMID 10457020
  2. A PXY-Mediated Transcriptional Network Integrates Signaling Mechanisms to Control Vascular Development in Arabidopsis. Smit ME, et al. Plant Cell, 2020 Feb. PMID 31806676, Free PMC Article
  3. Arabidopsis G-protein interactome reveals connections to cell wall carbohydrates and morphogenesis. Klopffleisch K, et al. Mol Syst Biol, 2011 Sep 27. PMID 21952135, Free PMC Article
  4. Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Riechmann JL, et al. Science, 2000 Dec 15. PMID 11118137
  5. CrY2H-seq: a massively multiplexed assay for deep-coverage interactome mapping. Wanamaker SA, et al. Nat Methods, 2017 Aug. PMID 28650476, Free PMC Article

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_001084021.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables DNA-binding transcription factor activity ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
enables transcription cis-regulatory region binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within abaxial cell fate specification IDA
Inferred from Direct Assay
more info
 PubMed 
acts_upstream_of_or_within regulation of DNA-templated transcription ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Plant-specific transcription factor YABBY family protein
NP_001077490.1
  • YABBY2 (YAB2); CONTAINS InterPro DOMAIN/s: High mobility group, superfamily (InterPro:IPR009071), YABBY protein (InterPro:IPR006780); BEST Arabidopsis thaliana protein match is: plant-specific transcription factor YABBY family protein (TAIR:AT2G26580.2); Has 446 Blast hits to 444 proteins in 124 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 433; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    2675813..2679824
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001084021.2 → NP_001077490.1  Plant-specific transcription factor YABBY family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001077490.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9SJE5, Q9XFB0
    UniProtKB/TrEMBL
    A0A178WE92, A0A5S9T9T8, A0A654E9W9
    Conserved Domains (1) summary
    pfam04690
    Location:5 → 160
    YABBY; YABBY protein
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9XFB0.1

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