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LSP1P1 lymphocyte-specific protein 1 pseudogene 1 [ Gallus gallus (chicken) ]

Gene ID: 374254, updated on 10-Oct-2024

Summary

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Symbol
LSP1P1provided by CGNC
Full Name
lymphocyte-specific protein 1 pseudogene 1provided by CGNC
Primary source
CGNC:4964
See related
Ensembl:ENSGALG00010024605
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Also known as
LSP1
Orthologs
human mouse all
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Genomic context

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See LSP1P1 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
12
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 5 NC_052536.1 (13660649..13699728, complement)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 5 NC_052577.1 (13629172..13668266, complement)

Chromosome 5 - NC_052536.1Genomic Context describing neighboring genes Neighboring gene mitochondrial ribosomal protein L23 Neighboring gene troponin T3, fast skeletal type Neighboring gene proline rich 33 Neighboring gene uncharacterized LOC124418006 Neighboring gene troponin I2, fast skeletal type Neighboring gene synaptotagmin 8

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Structural and functional analysis of a 0.5-Mb chicken region orthologous to the imprinted mammalian Ascl2/Mash2-Igf2-H19 region. Yokomine T, et al. Genome Res, 2005 Jan. PMID 15590938, Free PMC Article
  2. Full-length cDNAs from chicken bursal lymphocytes to facilitate gene function analysis. Caldwell RB, et al. Genome Biol, 2005. PMID 15642098, Free PMC Article
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables actin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
lymphocyte-specific protein 1
Names
lymphocyte specific protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001303036.2 → NP_001289965.1  lymphocyte-specific protein 1

    See identical proteins and their annotated locations for NP_001289965.1

    Status: VALIDATED

    Source sequence(s)
    JAENSK010000214
    UniProtKB/TrEMBL
    A0A8V1A633, Q5F3Y0
    Related
    ENSGALP00010036796.1, ENSGALT00010060036.1
    Conserved Domains (1) summary
    pfam02029
    Location:87 → 340
    Caldesmon; Caldesmon

RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052536.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    13660649..13699728 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_025150540.3 → XP_025006308.1  lymphocyte-specific protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A8V1A633, Q5F3Y0
    Conserved Domains (1) summary
    pfam02029
    Location:87 → 340
    Caldesmon; Caldesmon

  2. XM_015286521.3 → XP_015142007.2  lymphocyte-specific protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A8V1A0R5, A0A8V1A633
    Related
    ENSGALP00010036791.1, ENSGALT00010060031.1

  3. XM_015286522.3 → XP_015142008.2  lymphocyte-specific protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A8V1A0R5, A0A8V1A633
    Related
    ENSGALP00010036801.1, ENSGALT00010060041.1

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052577.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    13629172..13668266 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046917652.1 → XP_046773608.1  lymphocyte-specific protein 1 isoform X1

  2. XM_046917653.1 → XP_046773609.1  lymphocyte-specific protein 1 isoform X2

  3. XM_046917654.1 → XP_046773610.1  lymphocyte-specific protein 1 isoform X2

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_204342.1: Suppressed sequence

    Description
    NM_204342.1: This RefSeq was permanently suppressed because currently there is insufficient support for the transcript and the protein.
Nucleotide Protein Strain
Heading Accession and Version

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