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HOXA1 homeobox A1 [ Gallus gallus (chicken) ]

Gene ID: 374051, updated on 17-Aug-2024

Summary

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Official Symbol
HOXA1provided by CGNC
Official Full Name
homeobox A1provided by CGNC
Primary source
CGNC:49021
See related
Ensembl:ENSGALG00010001788
Gene type
protein coding
RefSeq status
MODEL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Also known as
HOXA2
Orthologs
human mouse all
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Genomic context

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See HOXA1 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
2
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 2 NC_052533.1 (32479290..32481661, complement)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 2 NC_052574.1 (32531903..32534275, complement)

Chromosome 2 - NC_052533.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC121110067 Neighboring gene src kinase associated phosphoprotein 2 Neighboring gene homeobox A2 Neighboring gene homeobox A3 Neighboring gene homeobox A4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Characterization of miR-10a mediated gene regulation in avian splenocytes. Trakooljul N, et al. Gene, 2012 May 25. PMID 22446044
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
homeobox protein Hox-A1
Names
homeo box A1
homeobox A2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052533.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    32479290..32481661 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003640697.6 → XP_003640745.1  homeobox protein Hox-A1

    UniProtKB/TrEMBL
    R4GHI8
    Related
    ENSGALP00010002367.1, ENSGALT00010004070.1
    Conserved Domains (1) summary
    pfam00046
    Location:218 → 271
    Homeobox; Homeobox domain

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052574.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    32531903..32534275 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040662828.2 → XP_040518762.1  homeobox protein Hox-A1

    UniProtKB/TrEMBL
    R4GHI8
    Conserved Domains (1) summary
    pfam00046
    Location:218 → 271
    Homeobox; Homeobox domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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