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ABCA1 ATP binding cassette subfamily A member 1 [ Gallus gallus (chicken) ]

Gene ID: 373945, updated on 10-Oct-2024

Summary

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Official Symbol
ABCA1provided by CGNC
Official Full Name
ATP binding cassette subfamily A member 1provided by CGNC
Primary source
CGNC:11502
See related
Ensembl:ENSGALG00010014122
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs
human mouse all
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Genomic context

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See ABCA1 in Genome Data Viewer
Location:
chromosome: Z
Exon count:
51
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) Z NC_052572.1 (55410930..55505344, complement)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) Z NC_059536.1 (55410930..55505344, complement)

Chromosome Z - NC_052572.1Genomic Context describing neighboring genes Neighboring gene pleckstrin and Sec7 domain containing 3 Neighboring gene uncharacterized LOC121108270 Neighboring gene nipsnap homolog 3A Neighboring gene uncharacterized LOC121108511 Neighboring gene uncharacterized LOC121108340

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Identification and functional analysis of a naturally occurring E89K mutation in the ABCA1 gene of the WHAM chicken. Attie AD, et al. J Lipid Res, 2002 Oct. PMID 12364545
  2. Spontaneous high density lipoprotein deficiency syndrome associated with a Z-linked mutation in chickens. Poernama F, et al. J Lipid Res, 1990 Jun. PMID 2373963
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ABC-type transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables lipid transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in lipid transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in intracellular membrane-bounded organelle IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
phospholipid-transporting ATPase ABCA1
Names
ATP-binding cassette sub-family A member 1
ATP-binding cassette, sub-family A (ABC1), member 1
NP_989476.1
XP_046761131.1
XP_046790590.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_204145.3 → NP_989476.1  phospholipid-transporting ATPase ABCA1

    See identical proteins and their annotated locations for NP_989476.1

    Status: PROVISIONAL

    Source sequence(s)
    JAENSK010000095
    UniProtKB/TrEMBL
    A0A8V0YUL4, Q8UVV4
    Related
    ENSGALP00010019955.1, ENSGALT00010033956.1
    Conserved Domains (3) summary
    TIGR01257
    Location:1 → 2235
    rim_protein; retinal-specific rim ABC transporter
    cd03263
    Location:900 → 1119
    ABC_subfamily_A; ATP-binding cassette domain of the lipid transporters, subfamily A
    pfam13732
    Location:2125 → 2217
    DUF4162; Domain of unknown function (DUF4162)

RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052572.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    55410930..55505344 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046905175.1 → XP_046761131.1  phospholipid-transporting ATPase ABCA1 isoform X1

    UniProtKB/TrEMBL
    Q8UVV4
    Related
    ENSGALP00010019945.1, ENSGALT00010033933.1

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_059536.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    55410930..55505344 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046934634.1 → XP_046790590.1  phospholipid-transporting ATPase ABCA1 isoform X1

    UniProtKB/TrEMBL
    Q8UVV4
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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