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ZNF622 zinc finger protein 622 [ Gallus gallus (chicken) ]

Gene ID: 373921, updated on 10-Oct-2024

Summary

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Official Symbol
ZNF622provided by CGNC
Official Full Name
zinc finger protein 622provided by CGNC
Primary source
CGNC:48958
See related
Ensembl:ENSGALG00010000603
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Also known as
ZPR9
Orthologs
human mouse all
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Genomic context

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See ZNF622 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
7
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 2 NC_052533.1 (75373038..75379750)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 2 NC_052574.1 (75377772..75384490)

Chromosome 2 - NC_052533.1Genomic Context describing neighboring genes Neighboring gene myosin X Neighboring gene microRNA 1766 Neighboring gene family with sequence similarity 134 member B Neighboring gene uncharacterized LOC121109786 Neighboring gene membrane associated ring-CH-type finger 11

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gonad-specific expression of two novel chicken complementary DNA isoforms. Kim H, et al. Biol Reprod, 2001 May. PMID 11319154
  2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in ribosomal large subunit biogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of preribosome, large subunit precursor IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cytoplasmic 60S subunit biogenesis factor ZNF622; zinc finger protein 622
Names
zinc finger-like protein 9
zn-finger protein C47

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_204130.3 → NP_989461.3  cytoplasmic 60S subunit biogenesis factor ZNF622

    Status: VALIDATED

    Source sequence(s)
    JAENSK010000040
    UniProtKB/TrEMBL
    A0A8V0X0H1, A0A8V0X7V2
    Related
    ENSGALP00010000649.1, ENSGALT00010001278.1
    Conserved Domains (3) summary
    PTZ00448
    Location:6 → 49
    PTZ00448; hypothetical protein; Provisional
    COG5188
    Location:34 → 146
    PRP9; Splicing factor 3a, subunit 3 [RNA processing and modification]
    sd00020
    Location:6 → 28
    ZF_C2H2; C2H2 Zn finger [structural motif]

RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052533.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    75373038..75379750
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040674088.2 → XP_040530022.1  zinc finger protein 622 isoform X1

    UniProtKB/TrEMBL
    A0A8V0X0H1
    Conserved Domains (3) summary
    PTZ00448
    Location:6 → 49
    PTZ00448; hypothetical protein; Provisional
    COG5188
    Location:34 → 146
    PRP9; Splicing factor 3a, subunit 3 [RNA processing and modification]
    sd00020
    Location:6 → 28
    ZF_C2H2; C2H2 Zn finger [structural motif]

  2. XM_040674089.2 → XP_040530023.1  zinc finger protein 622 isoform X2

    UniProtKB/TrEMBL
    A0A8V0X0H1
    Conserved Domains (3) summary
    PTZ00448
    Location:6 → 49
    PTZ00448; hypothetical protein; Provisional
    COG5188
    Location:34 → 146
    PRP9; Splicing factor 3a, subunit 3 [RNA processing and modification]
    sd00020
    Location:6 → 28
    ZF_C2H2; C2H2 Zn finger [structural motif]

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052574.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    75377772..75384490
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046910173.1 → XP_046766129.1  zinc finger protein 622 isoform X3

  2. XM_046910174.1 → XP_046766130.1  zinc finger protein 622 isoform X4

  3. XM_046910175.1 → XP_046766131.1  zinc finger protein 622 isoform X5

  4. XM_046910176.1 → XP_046766132.1  zinc finger protein 622 isoform X1

Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q90Y35.1 GenPept UniProtKB/Swiss-Prot:Q90Y35

Gene LinkOut

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