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krt62.L keratin 62 L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 373584, updated on 4-Nov-2024

Summary

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Official Symbol
krt62.L
Official Full Name
keratin 62 L homeolog
Primary source
Xenbase:XB-GENE-6466023
See related
EnsemblRapid:ENSXLAG00005033386 AllianceGenome:Xenbase:XB-GENE-6466023
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
XLK; lk-a; krt5.5; krt5.5.L
Summary
Predicted to be a structural constituent of skin epidermis. Acts upstream of or within limb bud formation. Predicted to be located in extracellular space and keratin filament. Is expressed in dermal system. [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See krt62.L in Genome Data Viewer
Location:
chromosome: 2L
Exon count:
9
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 2L NC_054373.1 (156252138..156262226)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 2L NC_030726.1 (150344217..150354305)

Chromosome 2L - NC_054373.1Genomic Context describing neighboring genes Neighboring gene keratin 78, gene 2 L homeolog Neighboring gene keratin 78, gene 1 L homeolog Neighboring gene keratin 61 L homeolog Neighboring gene keratin 60 L homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Reactivation of larval keratin gene (krt62.L) in blastema epithelium during Xenopus froglet limb regeneration. Satoh A, et al. Dev Biol, 2017 Dec 15. PMID 29079423
  2. New epidermal keratin genes from Xenopus laevis: hormonal and regional regulation of their expression during anuran skin metamorphosis. Watanabe Y, et al. Biochim Biophys Acta, 2001 Feb 16. PMID 11342212
  3. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables structural constituent of skin epidermis IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within intermediate filament organization IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within keratinization IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within limb bud formation IDA
Inferred from Direct Assay
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
  
located_in intermediate filament IEA
Inferred from Electronic Annotation
more info
  
located_in keratin filament IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
keratin 62 L homeolog
Names
keratin 5, gene 5 L homeolog
larval keratin

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001085584.1 → NP_001079053.1  keratin 62 L homeolog

    See identical proteins and their annotated locations for NP_001079053.1

    Status: PROVISIONAL

    Source sequence(s)
    AB045599
    UniProtKB/TrEMBL
    B7ZSI2, Q98UJ3
    Related
    ENSXLAP00005099731.1, ENSXLAT00005101656.1
    Conserved Domains (2) summary
    pfam00038
    Location:158 → 474
    Filament; Intermediate filament protein
    pfam16208
    Location:127 → 155
    Keratin_2_head; Keratin type II head

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054373.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    156252138..156262226
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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