nap1l1 nucleosome assembly protein 1-like 1 [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: nap1l1provided by ZNC
Official Full Name: nucleosome assembly protein 1-like 1provided by ZNC
Primary source: ZFIN:ZDB-GENE-030516-2
See related: Ensembl:ENSDARG00000101813 AllianceGenome:ZFIN:ZDB-GENE-030516-2
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: cb716; sb:cb13; wu:fb83g07
Summary: Predicted to enable chromatin binding activity and histone binding activity. Acts upstream of or within response to yeast. Predicted to be active in chromatin and nucleus. Is expressed in several structures, including immature eye; nervous system; neural tube; pharyngeal arch; and pronephros. Human ortholog(s) of this gene implicated in pancreatic cancer. Orthologous to several human genes including NAP1L1 (nucleosome assembly protein 1 like 1). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 4

Exon count:: 16

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	4	NC_007115.7 (2352783..2380179, complement)
105	previous assembly	GRCz10 (GCF_000002035.5)	4	NC_007115.6 (1469461..1496886, complement)

Chromosome 4 - NC_007115.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables chromatin binding	IBA Inferred from Biological aspect of Ancestor more info
enables histone binding	IBA Inferred from Biological aspect of Ancestor more info

Process	Evidence Code	Pubs
involved_in nucleosome assembly	IBA Inferred from Biological aspect of Ancestor more info
acts_upstream_of_or_within nucleosome assembly	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within response to yeast	IDA Inferred from Direct Assay more info	PubMed

Component	Evidence Code	Pubs
located_in chromatin	IBA Inferred from Biological aspect of Ancestor more info
located_in cytoplasm	IEA Inferred from Electronic Annotation more info
is_active_in nucleus	IBA Inferred from Biological aspect of Ancestor more info
located_in nucleus	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: nucleosome assembly protein 1-like 1

Names: nap1l1b

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_201318.1 → NP_958475.1 nucleosome assembly protein 1-like 1

See identical proteins and their annotated locations for NP_958475.1

Status: PROVISIONAL

Source sequence(s)

BC044152

UniProtKB/TrEMBL

A0A286Y948, A0A8N7XJ26, B2GTB4, Q803X7

Related

ENSDARP00000143696.2, ENSDART00000177727.2

Conserved Domains (1) summary

pfam00956
Location:64 → 335

NAP; Nucleosome assembly protein (NAP)

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

NC_007115.7 Reference GRCz11 Primary Assembly

Range

2352783..2380179 complement

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_005171667.4 → XP_005171724.1 nucleosome assembly protein 1-like 1 isoform X1

UniProtKB/TrEMBL

A0A8M2BJ06

Conserved Domains (1) summary

pfam00956
Location:75 → 342

NAP; Nucleosome assembly protein (NAP)
XM_021474937.2 → XP_021330612.1 nucleosome assembly protein 1-like 1 isoform X2

UniProtKB/TrEMBL

A0A8M9PH16

Conserved Domains (1) summary

pfam00956
Location:75 → 346

NAP; Nucleosome assembly protein (NAP)