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Ubl3 ubiquitin-like 3 [ Rattus norvegicus (Norway rat) ]

Gene ID: 363869, updated on 2-Nov-2024

Summary

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Official Symbol
Ubl3provided by RGD
Official Full Name
ubiquitin-like 3provided by RGD
Primary source
RGD:1305431
See related
EnsemblRapid:ENSRNOG00000000921 AllianceGenome:RGD:1305431
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary
Predicted to be located in plasma membrane. Orthologous to human UBL3 (ubiquitin like 3). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in Brain (RPKM 420.7), Lung (RPKM 364.2) and 9 other tissues See more
Orthologs
human mouse all
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Genomic context

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See Ubl3 in Genome Data Viewer
Location:
12p11
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 12 NC_086030.1 (11509912..11554548)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 12 NC_051347.1 (6473684..6518331)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 12 NC_005111.4 (7865938..7911526)

Chromosome 12 - NC_086030.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC108352417 Neighboring gene uncharacterized LOC120095882 Neighboring gene uncharacterized LOC134481151 Neighboring gene peptidylprolyl isomerase A, pseudogene 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. Large-scale proteomics and phosphoproteomics of urinary exosomes. Gonzales PA, et al. J Am Soc Nephrol, 2009 Feb. PMID 19056867, Free PMC Article
  2. Proteomic analysis of podocyte exosome-enriched fraction from normal human urine. Prunotto M, et al. J Proteomics, 2013 Apr 26. PMID 23376485
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). Gerhard DS, et al. Genome Res, 2004 Oct. PMID 15489334, Free PMC Article
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Clone Names

  • MGC109350

Gene Ontology Provided by RGD

Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
ubiquitin-like protein 3
Names
MUB
membrane-anchored ubiquitin-fold protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001015030.1 → NP_001015030.1  ubiquitin-like protein 3

    See identical proteins and their annotated locations for NP_001015030.1

    Status: VALIDATED

    Source sequence(s)
    BC091342
    UniProtKB/Swiss-Prot
    Q5BJT2
    Related
    ENSRNOP00000109338.1, ENSRNOT00000061229.5
    Conserved Domains (1) summary
    cd17048
    Location:10 → 91
    Ubl_UBL3; ubiquitin-like (Ubl) domain found in ubiquitin-like protein 3 (UBL3) and similar proteins

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086030.1 Reference GRCr8

    Range
    11509912..11554548
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q5BJT2.1 GenPept UniProtKB/Swiss-Prot:Q5BJT2

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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