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PCNAP1 proliferating cell nuclear antigen pseudogene 1 [ Homo sapiens (human) ]

Gene ID: 359806, updated on 17-Sep-2024

Summary

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Official Symbol
PCNAP1provided by HGNC
Official Full Name
proliferating cell nuclear antigen pseudogene 1provided by HGNC
Primary source
HGNC:HGNC:8732
See related
AllianceGenome:HGNC:8732
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
p1PCNA
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Genomic context

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See PCNAP1 in Genome Data Viewer
Location:
4q23
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 4 NC_000004.12 (99160593..99161647, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 4 NC_060928.1 (102475351..102476405, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 4 NC_000004.11 (100081750..100082804, complement)

Chromosome 4 - NC_000004.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC100507053 Neighboring gene uncharacterized LOC124900739 Neighboring gene ADH4 promoter Neighboring gene alcohol dehydrogenase 4 (class II), pi polypeptide Neighboring gene 4E3 enhancer upstream of ADH4 Neighboring gene proliferating cell nuclear antigen pseudogene 2 Neighboring gene NANOG hESC enhancer GRCh37_chr4:100126223-100126724 Neighboring gene ADH6 promoter Neighboring gene alcohol dehydrogenase 6 (class V)

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The Expression and Clinical Significance of PCNAP1 in Hepatocellular Carcinoma Patients. Chen Y, et al. J Immunol Res, 2022. PMID 35224110, Free PMC Article
  2. LncRNA PCNAP1 modulates hepatitis B virus replication and enhances tumor growth of liver cancer. Feng J, et al. Theranostics, 2019. PMID 31410212, Free PMC Article
  3. lncRNA PCNAP1 predicts poor prognosis in breast cancer and promotes cancer metastasis via miR‑340‑5p‑dependent upregulation of SOX4. Yu Y, et al. Oncol Rep, 2020 Oct. PMID 32945462, Free PMC Article
  4. Cloning, sequencing, and chromosomal localization of two tandemly arranged human pseudogenes for the proliferating cell nuclear antigen (PCNA). Taniguchi Y, et al. Mamm Genome, 1996 Dec. PMID 8995762
  5. The PCNA pseudogenes in the human genome. Stoimenov I, et al. BMC Res Notes, 2012 Feb 6. PMID 22309575, Free PMC Article

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. The Expression and Clinical Significance of PCNAP1 in Hepatocellular Carcinoma Patients.
    Title: The Expression and Clinical Significance of PCNAP1 in Hepatocellular Carcinoma Patients.
  2. lncRNA PCNAP1 predicts poor prognosis in breast cancer and promotes cancer metastasis via miR3405pdependent upregulation of SOX4.
    Title: lncRNA PCNAP1 predicts poor prognosis in breast cancer and promotes cancer metastasis via miR‑340‑5p‑dependent upregulation of SOX4.
  3. LncRNA PCNAP1 modulates hepatitis B virus replication and enhances tumor growth of liver cancer.
    Title: LncRNA PCNAP1 modulates hepatitis B virus replication and enhances tumor growth of liver cancer.
Submit: New GeneRIF Correction

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Other Names

  • PCNA pseudogene p1PCNA

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_028270.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AP002026

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000004.12 Reference GRCh38.p14 Primary Assembly

    Range
    99160593..99161647 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060928.1 Alternate T2T-CHM13v2.0

    Range
    102475351..102476405 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NG_002902.1: Suppressed sequence

    Description
    NG_002902.1: This RefSeq was permanently suppressed because it is now thought that this pseudogene is transcribed.

  2. NG_025143.1: Suppressed sequence

    Description
    NG_025143.1: This RefSeq was permanently suppressed because it is now thought that this pseudogene is transcribed.
Nucleotide Protein
Heading Accession and Version

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