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RAF1P1 RAF1 pseudogene 1 [ Homo sapiens (human) ]

Gene ID: 348910, updated on 17-Sep-2024

Summary

Official Symbol
RAF1P1provided by HGNC
Official Full Name
RAF1 pseudogene 1provided by HGNC
Primary source
HGNC:HGNC:9830
See related
Ensembl:ENSG00000250040 AllianceGenome:HGNC:9830
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

See RAF1P1 in Genome Data Viewer
Location:
4p16.1
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 4 NC_000004.12 (10254926..10256659, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 4 NC_060928.1 (10230889..10232622, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 4 NC_000004.11 (10256550..10258283, complement)

Chromosome 4 - NC_000004.12Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15279 Neighboring gene uncharacterized LOC124900666 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21310 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21311 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:10124378-10124878 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:10124879-10125379 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr4:10130393-10131592 Neighboring gene developmental pluripotency associated 4 pseudogene Neighboring gene CRISPRi-validated cis-regulatory element chr4.979 Neighboring gene MX dynamin like GTPase 1 pseudogene Neighboring gene MX dynamin like GTPase 1 pseudogene

Genomic regions, transcripts, and products

Phenotypes

EBI GWAS Catalog

Description
Genome-wide association analysis of age at onset in schizophrenia in a European-American sample
EBI GWAS Catalog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_003018.3 

    Range
    101..1834
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    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000004.12 Reference GRCh38.p14 Primary Assembly

    Range
    10254926..10256659 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060928.1 Alternate T2T-CHM13v2.0

    Range
    10230889..10232622 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)