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actc1c actin, alpha, cardiac muscle 1c [ Danio rerio (zebrafish) ]

Gene ID: 337770, updated on 28-Sep-2024

Summary

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Official Symbol
actc1cprovided by ZNC
Official Full Name
actin, alpha, cardiac muscle 1cprovided by ZNC
Primary source
ZFIN:ZDB-GENE-030131-172
See related
Ensembl:ENSDARG00000076126 AllianceGenome:ZFIN:ZDB-GENE-030131-172
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
zewp0073; hm:zewp0073; si:ch73-187m15.4
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Genomic context

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See actc1c in Genome Data Viewer
Location:
chromosome: 19
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 19 NC_007130.7 (47549567..47555936, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 19 NC_007130.6 (47988578..47994983, complement)

Chromosome 19 - NC_007130.7Genomic Context describing neighboring genes Neighboring gene gremlin-1 Neighboring gene secretogranin V Neighboring gene small nucleolar RNA SNORD94 Neighboring gene ribonucleotide reductase M2 polypeptide Neighboring gene ephrin type-A receptor 7

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. asb5a/asb5b Double Knockout Affects Zebrafish Cardiac Contractile Function. Cai W, et al. Int J Mol Sci, 2023 Nov 15. PMID 38003559, Free PMC Article
  2. A new evolutionary model for the vertebrate actin family including two novel groups. Witjes L, et al. Mol Phylogenet Evol, 2019 Dec. PMID 31560986
  3. Cardiac transcriptome and dilated cardiomyopathy genes in zebrafish. Shih YH, et al. Circ Cardiovasc Genet, 2015 Apr. PMID 25583992, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

General protein information

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Preferred Names
actin alpha cardiac muscle 1c; actin, alpha cardiac muscle

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007130.7 Reference GRCz11 Primary Assembly

    Range
    47549567..47555936 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002665732.7 → XP_002665778.1  actin, alpha cardiac muscle

    See identical proteins and their annotated locations for XP_002665778.1

    UniProtKB/TrEMBL
    A0A8M1MZL2, Q6IQR3
    Related
    ENSDARP00000100434.1, ENSDART00000114549.3
    Conserved Domains (1) summary
    PTZ00281
    Location:4 → 377
    PTZ00281; actin; Provisional
Nucleotide Protein
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Gene LinkOut

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