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shg1 Set1C complex subunit Shg1 [ Schizosaccharomyces pombe (fission yeast) ]

Gene ID: 3361506, updated on 18-Sep-2024

Summary

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Official Symbol
shg1
Official Full Name
Set1C complex subunit Shg1
Primary source
PomBase:SPAC17G8.09
Locus tag
SPOM_SPAC17G8.09
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Schizosaccharomyces pombe (strain: 972h-)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
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Genomic context

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See shg1 in Genome Data Viewer
Location:
chromosome: I
Exon count:
3
Sequence:
Chromosome: I; NC_003424.3 (2357319..2358388)

Chromosome I - NC_003424.3Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene GDT1-like protein Neighboring gene ncRNA Neighboring gene mitotic spindle checkpoint ubiquitin ligase Dma1 Neighboring gene ncRNA Neighboring gene mannosyltransferase Imt3 Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003424.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Histone H2B ubiquitylation promotes activity of the intact Set1 histone methyltransferase complex in fission yeast. Racine A, et al. J Biol Chem, 2012 Jun 1. PMID 22505722, Free PMC Article
  2. High conservation of the Set1/Rad6 axis of histone 3 lysine 4 methylation in budding and fission yeasts. Roguev A, et al. J Biol Chem, 2003 Mar 7. PMID 12488447
  3. A comparative analysis of an orthologous proteomic environment in the yeasts Saccharomyces cerevisiae and Schizosaccharomyces pombe. Roguev A, et al. Mol Cell Proteomics, 2004 Feb. PMID 14617822
  4. Conservation and rewiring of functional modules revealed by an epistasis map in fission yeast. Roguev A, et al. Science, 2008 Oct 17. PMID 18818364, Free PMC Article
  5. Hierarchical modularity and the evolution of genetic interactomes across species. Ryan CJ, et al. Mol Cell, 2012 Jun 8. PMID 22681890, Free PMC Article

See all (12) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by PomBase

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in transcription initiation-coupled chromatin remodeling IC
Inferred by Curator
more info
 PubMed 
Component Evidence Code Pubs
part_of Set1C/COMPASS complex IDA
Inferred from Direct Assay
more info
 PubMed 
is_active_in chromatin IC
Inferred by Curator
more info
 PubMed 
is_active_in cytosol HDA PubMed 
is_active_in nucleus HDA PubMed 

General protein information

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Preferred Names
Set1C complex subunit Shg1

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003424.3 Reference assembly

    Range
    2357319..2358388
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001019163.3 → NP_001018248.2  Set1C complex subunit Shg1 [Schizosaccharomyces pombe]

    See identical proteins and their annotated locations for NP_001018248.2

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    Q10321, Q7Z989
    Conserved Domains (1) summary
    pfam05205
    Location:11 → 108
    COMPASS-Shg1; COMPASS (Complex proteins associated with Set1p) component shg1
Nucleotide Protein
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