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BF9343_0999 possible transglutaminase-family protein [ Bacteroides fragilis NCTC 9343 ]

Gene ID: 3288091, discontinued on 6-Feb-2015
  • All Gene records for this genome have been discontinued due to a change in scope for prokaryotic genomes in Gene. At the time this Gene record was discontinued, the RefSeq genome was re-annotated with the following features at this location:

Summary

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Gene symbol
BF9343_0999
Gene description
possible transglutaminase-family protein
Locus tag
BF9343_0999
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Bacteroides fragilis NCTC 9343 (culture-collection: NCTC:9343)
Lineage
Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides
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Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003228.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Miscellaneous features

  • Loc: c1298062-1297895 Pfam match to entry PF01841 Transglut_core, Transglutaminase-like superfamily, score 36.8, E-value 4.3e-08
  • Loc: c1298569-1298537 PS00013 Prokaryotic membrane lipoprotein lipid attachment site.

General protein information

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Names
possible transglutaminase-family protein
YP_210728.1
  • Similar to Bacteroides thetaiotaomicron conserved hypothetical protein BT4412 SWALL:Q89ZG5 (EMBL:AE016945) (905 aa) fasta scores: E(): 8.6e-146, 72.92% id in 916 aa, and to Pirellula sp similar to polyhydroxyalkanoate depolymerase rb10165 SWALL:CAD78738 (EMBL:BX294151) (1048 aa) fasta scores: E(): 1e-18, 28.86% id in 433 aa

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003228.3 Reference assembly

    Range
    1295918..1298596 complement
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    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. YP_210728.1 possible transglutaminase-family protein [Bacteroides fragilis NCTC 9343]

    Status: PROVISIONAL

Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q5LGG0.1