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Gm5082 predicted gene 5082 [ Mus musculus (house mouse) ]

Gene ID: 328231, updated on 17-Aug-2024

Summary

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Official Symbol
Gm5082provided by MGI
Official Full Name
predicted gene 5082provided by MGI
Primary source
MGI:MGI:3644232
See related
Ensembl:ENSMUSG00000054258 AllianceGenome:MGI:3644232
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
EG328231; A030008J09
Expression
Low expression observed in reference dataset See more
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Genomic context

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See Gm5082 in Genome Data Viewer
Location:
13 A4; 13 20.57 cM
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 13 NC_000079.7 (41802891..41810253)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 13 NC_000079.6 (41648847..41653747)

Chromosome 13 - NC_000079.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 32401 Neighboring gene predicted gene, 32184 Neighboring gene STARR-positive B cell enhancer ABC_E7229 Neighboring gene STARR-positive B cell enhancer ABC_E5388 Neighboring gene STARR-seq mESC enhancer starr_34304 Neighboring gene STARR-positive B cell enhancer ABC_E4066 Neighboring gene transmembrane protein 170B Neighboring gene STARR-positive B cell enhancer mm9_chr13:41733437-41733738 Neighboring gene VISTA enhancer mm192 Neighboring gene predicted gene, 40925 Neighboring gene STARR-seq mESC enhancer starr_34305 Neighboring gene STARR-seq mESC enhancer starr_34306 Neighboring gene androgen dependent TFPI regulating protein Neighboring gene STARR-positive B cell enhancer ABC_E7230 Neighboring gene STARR-seq mESC enhancer starr_34308

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  2. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  3. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
  4. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article
  5. Functional annotation of a full-length mouse cDNA collection. Kawai J, et al. Nature, 2001 Feb 8. PMID 11217851

See all (8) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_188112.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC133159
    Related
    ENSMUST00000221920.2

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000079.7 Reference GRCm39 C57BL/6J

    Range
    41802891..41810253
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001145878.1: Suppressed sequence

    Description
    NM_001145878.1: This RefSeq was removed because currently there is support for the transcript but not for the protein.

  2. NM_177808.4: Suppressed sequence

    Description
    NM_177808.4: This RefSeq was removed because currently there is support for the transcript but not for the protein.
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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