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rpsM 30S ribosomal protein S13 [ Thermus thermophilus HB8 ]

Gene ID: 3167962, updated on 12-Feb-2024

Summary

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Gene symbol
rpsM
Gene description
30S ribosomal protein S13
Locus tag
TTH_RS08435
Gene type
protein coding
Organism
Thermus thermophilus HB8 (strain: HB8, type-material: type strain of Thermus thermophilus)
Lineage
Bacteria; Deinococcota; Deinococci; Thermales; Thermaceae; Thermus
Old locus tag
TTHA1667
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Genomic context

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Location:
chromosome: 1
Sequence:
Chromosome: 1; NC_006461.1 (1578744..1579124, complement)

Chromosome 1 - NC_006461.1Genomic Context describing neighboring genes Neighboring gene 30S ribosomal protein S4 Neighboring gene 30S ribosomal protein S11 Neighboring gene 50S ribosomal protein L36 Neighboring gene translation initiation factor IF-1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_006461.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Mechanism for expanding the decoding capacity of transfer RNAs by modification of uridines. Weixlbaumer A, et al. Nat Struct Mol Biol, 2007 Jun. PMID 17496902, Free PMC Article
  2. Multiple effects of S13 in modulating the strength of intersubunit interactions in the ribosome during translation. Cukras AR, et al. J Mol Biol, 2005 May 27. PMID 15876367, Free PMC Article
  3. Ribosomal proteins S12 and S13 function as control elements for translocation of the mRNA:tRNA complex. Cukras AR, et al. Mol Cell, 2003 Aug. PMID 14536072
  4. Assembly of the 30S ribosomal subunit: positioning ribosomal protein S13 in the S7 assembly branch. Grondek JF, et al. RNA, 2004 Dec. PMID 15525707, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
30S ribosomal protein S13

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_006461.1 Reference assembly

    Range
    1578744..1579124 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. WP_008633368.1 MULTISPECIES: 30S ribosomal protein S13 [Thermus]

    See identical proteins and their annotated locations for WP_008633368.1

    UniProtKB/Swiss-Prot
    P62655, P80377, Q5SHR3, Q9RA65
    UniProtKB/TrEMBL
    A0A3P4AUB7, F6DEM7, H7GI58, H9ZPM7
    Conserved Domains (1) summary
    PRK05179
    Location:1 → 122
    rpsM; 30S ribosomal protein S13; Validated
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
2HHH_M.1
2UU9_M.1
2UUA_M.1
2UUB_M.1
2UUC_M.1
2UXB_M.1
2UXC_M.1
2UXD_M.1
2VQE_M.1
2VQF_M.1
3OTO_M.1
3T1H_M.1
3T1Y_M.1
4B3M_M.1
4B3R_M.1
4B3S_M.1
4B3T_M.1
4CR1_M.1
4DR1_M.1
4DR2_M.1
4DR3_M.1
4DR4_M.1
4DR5_M.1
4DR6_M.1
4DR7_M.1
4DUY_M.1
4DUZ_M.1
4DV0_M.1
4DV1_M.1
4DV2_M.1
4DV3_M.1
4DV4_M.1
4DV5_M.1
4DV6_M.1
4DV7_M.1
4JI0_M.1
4JI1_M.1
4JI2_M.1
4JI3_M.1
4JI4_M.1
4JI5_M.1
4JI6_M.1
4JI7_M.1
4JI8_M.1
4LF4_M.1
4LF5_M.1
4LF6_M.1
4LF7_M.1
4LF8_M.1
4LF9_M.1
4LFA_M.1
4LFB_M.1
4LFC_M.1
4NXM_M.1
4NXN_M.1
4OX9_M.1
4YY3_M.1
5BR8_M.1
5IMQ_Q.1
5IMR_Q.1
5LMN_M.1
5LMO_M.1
5LMP_M.1
5LMQ_M.1
5LMR_M.1
5LMS_M.1
5LMT_M.1
5LMU_M.1
5LMV_M.1
5ZLU_R.1
6DTI_M.1
6MKN_M.1
6MPI_M.1
6NY6_M.1
P80377.3

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