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IE180 transcriptional regulator ICP4 [ Suid alphaherpesvirus 1 ]

Gene ID: 2952540, updated on 18-Aug-2023

Summary

Gene symbol
IE180
Gene description
transcriptional regulator ICP4
Locus tag
SuHV1_gp63
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Suid alphaherpesvirus 1 (strain: Composite of 6 strains, acronym: PRV, acronym: SuHV-1, nat-host: Sus scrofa)
Lineage
Viruses; Duplodnaviria; Heunggongvirae; Peploviricota; Herviviricetes; Herpesvirales; Herpesviridae; Alphaherpesvirinae; Varicellovirus
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Genomic context

Sequence:
NC_006151.1 (102696..107804, complement)

NC_006151.1Genomic Context describing neighboring genes Neighboring gene protein V57 Neighboring gene nuclear protein UL3 Neighboring gene uracil-DNA glycosylase Neighboring gene envelope glycoprotein L Neighboring gene miscRNA Neighboring gene ubiquitin E3 ligase ICP0 Neighboring gene regulatory protein ICP22 Neighboring gene serine/threonine protein kinase US3 Neighboring gene envelope glycoprotein G

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

General gene information

regulatory

  • Loc: c102719-102714 experiment = consistent with mRNA size (sense unknown) in strain In-Fh , inference = ab initio prediction:PolyADQ: , regulatory_class = polyA_signal_sequence
  • Loc: c107804-107798 inference = ab initio prediction:TRANSFACFind: , regulatory_class = TATA_box

General protein information

Preferred Names
transcriptional regulator ICP4

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_006151.1 Reference assembly

    Range
    102696..107804 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. YP_068382.1 transcriptional regulator ICP4 [Suid alphaherpesvirus 1]

    See identical proteins and their annotated locations for YP_068382.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    P33479
    UniProtKB/TrEMBL
    A0A172XDM4, Q5PP75
    Conserved Domains (3) summary
    PHA03307
    Location:1281351
    PHA03307; transcriptional regulator ICP4; Provisional
    pfam03584
    Location:482653
    Herpes_ICP4_N; Herpesvirus ICP4-like protein N-terminal region
    pfam03585
    Location:9731350
    Herpes_ICP4_C; Herpesvirus ICP4-like protein C-terminal region