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US6 envelope glycoprotein D [ Suid alphaherpesvirus 1 ]

Gene ID: 2952521, updated on 18-Aug-2023

Summary

Gene symbol
US6
Gene description
envelope glycoprotein D
Locus tag
SuHV1_gp68
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Suid alphaherpesvirus 1 (strain: Composite of 6 strains, acronym: PRV, acronym: SuHV-1, nat-host: Sus scrofa)
Lineage
Viruses; Duplodnaviria; Heunggongvirae; Peploviricota; Herviviricetes; Herpesvirales; Herpesviridae; Alphaherpesvirinae; Varicellovirus
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Genomic context

Sequence:
NC_006151.1 (121024..123398)

NC_006151.1Genomic Context describing neighboring genes Neighboring gene regulatory protein ICP22 Neighboring gene serine/threonine protein kinase US3 Neighboring gene envelope glycoprotein G Neighboring gene envelope glycoprotein I Neighboring gene envelope glycoprotein E Neighboring gene membrane protein US9 Neighboring gene virion protein US2 Neighboring gene regulatory protein ICP22

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

General gene information

Miscellaneous features

  • Loc: 121033-122622 derived from strain Ka
  • Loc: 121054-121054 transcriptional initiation site inference = ab initio prediction:NNPP:
  • Loc: 121059-121059 experiment = approximation (+/- 10 nt) of transcriptional initation site from S1 mapping in strain In-Fh
  • Loc: 122285-122285 transcriptional initiation site inference = ab initio prediction:NNPP:

polyA_site

  • Loc: 123382-123382 experiment = approximation (+/- 90 nt) from S1 mapping in strain In-Fh (US6)

regulatory

  • Loc: 121024-121030 inference = ab initio prediction:TRANSFACFind: , regulatory_class = TATA_box
  • Loc: 122253-122259 inference = ab initio prediction:TRANSFACFind: , regulatory_class = TATA_box
  • Loc: 123394-123398 inference = ab initio prediction:PolyADQ: , regulatory_class = polyA_signal_sequence

General protein information

Preferred Names
envelope glycoprotein D
YP_068387.1
  • gD family

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_006151.1 Reference assembly

    Range
    121024..123398
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. YP_068387.1 envelope glycoprotein D [Suid alphaherpesvirus 1]

    See identical proteins and their annotated locations for YP_068387.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A0S2MM29, G3G922, Q5PP78, Q9IW02
    Conserved Domains (1) summary
    PHA03264
    Location:13395
    PHA03264; envelope glycoprotein D; Provisional