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Mrps31 mitochondrial ribosomal protein S31 [ Rattus norvegicus (Norway rat) ]

Gene ID: 290850, updated on 17-Aug-2024

Summary

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Official Symbol
Mrps31provided by RGD
Official Full Name
mitochondrial ribosomal protein S31provided by RGD
Primary source
RGD:1307668
See related
EnsemblRapid:ENSRNOG00000011839 AllianceGenome:RGD:1307668
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
S31mt; MRP-S31
Summary
Predicted to enable protein domain specific binding activity. Predicted to be located in mitochondrion and nucleolus. Predicted to be part of mitochondrial small ribosomal subunit. Orthologous to human MRPS31 (mitochondrial ribosomal protein S31). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in Adrenal (RPKM 122.0), Heart (RPKM 116.1) and 9 other tissues See more
Orthologs
human mouse all
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Genomic context

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Location:
16q12.5
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 16 NC_086034.1 (76303807..76332970, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 16 NC_051351.1 (69601349..69621609, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 16 NC_005115.4 (74467874..74504834, complement)

Chromosome 16 - NC_086034.1Genomic Context describing neighboring genes Neighboring gene solute carrier family 20 member 2 Neighboring gene uncharacterized LOC120097400 Neighboring gene small integral membrane protein 19 Neighboring gene uncharacterized LOC120097532 Neighboring gene solute carrier family 25 member 15 Neighboring gene lncRNA derived from hepatocytes Neighboring gene transmembrane phosphoinositide 3-phosphatase and tensin homolog 2 Neighboring gene SUB1 regulator of transcription, pseudogene 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. Imogen 38: a novel 38-kD islet mitochondrial autoantigen recognized by T cells from a newly diagnosed type 1 diabetic patient. Arden SD, et al. J Clin Invest, 1996 Jan 15. PMID 8567980, Free PMC Article
  2. The Chediak-Higashi protein interacts with SNARE complex and signal transduction proteins. Tchernev VT, et al. Mol Med, 2002 Jan. PMID 11984006, Free PMC Article
  3. Integrated analysis of protein composition, tissue diversity, and gene regulation in mouse mitochondria. Mootha VK, et al. Cell, 2003 Nov 26. PMID 14651853
  4. The mRNA-bound proteome and its global occupancy profile on protein-coding transcripts. Baltz AG, et al. Mol Cell, 2012 Jun 8. PMID 22681889
  5. A mitochondrial protein compendium elucidates complex I disease biology. Pagliarini DJ, et al. Cell, 2008 Jul 11. PMID 18614015, Free PMC Article

See all (8) citations in PubMed

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Markers

Homology

Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables protein domain specific binding ISO
Inferred from Sequence Orthology
more info
  
enables structural constituent of ribosome IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
part_of mitochondrial small ribosomal subunit IEA
Inferred from Electronic Annotation
more info
  
part_of mitochondrial small ribosomal subunit ISS
Inferred from Sequence or Structural Similarity
more info
  
located_in mitochondrion ISO
Inferred from Sequence Orthology
more info
  
located_in nucleolus ISO
Inferred from Sequence Orthology
more info
  

General protein information

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Preferred Names
small ribosomal subunit protein mS31
Names
28S ribosomal protein S31, mitochondrial

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001106091.1 → NP_001099561.1  small ribosomal subunit protein mS31

    See identical proteins and their annotated locations for NP_001099561.1

    Status: PROVISIONAL

    Source sequence(s)
    CH473970
    UniProtKB/Swiss-Prot
    B0BN56
    UniProtKB/TrEMBL
    A0A8I5Y290
    Related
    ENSRNOP00000015790.4, ENSRNOT00000015790.7
    Conserved Domains (1) summary
    pfam15433
    Location:87 → 379
    MRP-S31; Mitochondrial 28S ribosomal protein S31

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086034.1 Reference GRCr8

    Range
    76303807..76332970 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_063275251.1 → XP_063131321.1  small ribosomal subunit protein mS31 isoform X1

    UniProtKB/Swiss-Prot
    B0BN56
    UniProtKB/TrEMBL
    A0A8I5Y290
    Related
    ENSRNOP00000077968.2, ENSRNOT00000111625.2

  2. XM_063275252.1 → XP_063131322.1  small ribosomal subunit protein mS31 isoform X1

    UniProtKB/Swiss-Prot
    B0BN56
    UniProtKB/TrEMBL
    A0A8I5Y290

  3. XM_063275253.1 → XP_063131323.1  small ribosomal subunit protein mS31 isoform X2

Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
B0BN56.1 GenPept UniProtKB/Swiss-Prot:B0BN56

Gene LinkOut

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