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OSTM1 osteoclastogenesis associated transmembrane protein 1 [ Homo sapiens (human) ]

Gene ID: 28962, updated on 2-Nov-2024

Summary

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Official Symbol
OSTM1provided by HGNC
Official Full Name
osteoclastogenesis associated transmembrane protein 1provided by HGNC
Primary source
HGNC:HGNC:21652
See related
Ensembl:ENSG00000081087 MIM:607649; AllianceGenome:HGNC:21652
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
GL; GIPN; OPTB5; HSPC019
Summary
This gene encodes a protein that may be involved in the degradation of G proteins via the ubiquitin-dependent proteasome pathway. The encoded protein binds to members of subfamily A of the regulator of the G-protein signaling (RGS) family through an N-terminal leucine-rich region. This protein also has a central RING finger-like domain and E3 ubiquitin ligase activity. This protein is highly conserved from flies to humans. Defects in this gene may cause the autosomal recessive, infantile malignant form of osteopetrosis. [provided by RefSeq, Jul 2008]
Expression
Ubiquitous expression in fat (RPKM 17.8), adrenal (RPKM 13.8) and 24 other tissues See more
Orthologs
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Genomic context

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See OSTM1 in Genome Data Viewer
Location:
6q21
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (108041409..108074741, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (109218461..109251819, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (108362613..108395945, complement)

Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene ribosomal protein L3 pseudogene 7 Neighboring gene uncharacterized LOC105377929 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:108352965-108353466 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:108353467-108353966 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17446 Neighboring gene H3K27ac hESC enhancer GRCh37_chr6:108401031-108401700 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:108438941-108439528 Neighboring gene uncharacterized LOC124901368 Neighboring gene OSTM1 antisense RNA 1 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24909 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:108479041-108479939 Neighboring gene NANOG hESC enhancer GRCh37_chr6:108481039-108481540 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:108484466-108485367 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:108486269-108487170 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr6:108488071-108488972 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:108489873-108490774 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:108490775-108491674 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:108497591-108498326 Neighboring gene nuclear receptor subfamily 2 group E member 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. OSTM1 pleiotropic roles from osteopetrosis to neurodegeneration.
    Title: OSTM1 pleiotropic roles from osteopetrosis to neurodegeneration.
  2. Cryo-EM structure of the lysosomal chloride-proton exchanger CLC-7 in complex with OSTM1.
    Title: Cryo-EM structure of the lysosomal chloride-proton exchanger CLC-7 in complex with OSTM1.
  3. Osteopetrosis-Associated Transmembrane Protein 1 Recruits RNA Exosome To Restrict Hepatitis B Virus Replication.
    Title: Osteopetrosis-Associated Transmembrane Protein 1 Recruits RNA Exosome To Restrict Hepatitis B Virus Replication.
  4. These studies defined bifunctional roles for Ostm1 as a major regulator of preosteoclast cytoskeletal rearrangements toward cell multinucleation and of mature osteoclast intracellular lysosomal trafficking and exocytosis mechanism, both of which are essential for bone resorption.
    Title: Ostm1 Bifunctional Roles in Osteoclast Maturation: Insights From a Mouse Model Mimicking a Human OSTM1 Mutation.
  5. Homozygous splice defect in OSTM1, coexisting with MANEAL mutation was identified in a patient with neurological disorder with brain iron accumulation.
    Title: Coexisting variants in OSTM1 and MANEAL cause a complex neurodegenerative disorder with NBIA-like brain abnormalities.
  6. KIF5B is essential for Ostm1 intracellular dispersion.
    Title: Role of Ostm1 Cytosolic Complex with Kinesin 5B in Intracellular Dispersion and Trafficking.
  7. Ostm1 has a primary and autonomous role in neuronal homeostasis
    Title: Severe neurodegeneration with impaired autophagy mechanism triggered by ostm1 deficiency.
  8. Common gating underlies the slow voltage activation of ClC-7.
    Title: Common gating of both CLC transporter subunits underlies voltage-dependent activation of the 2Cl-/1H+ exchanger ClC-7/Ostm1.
  9. we describe for the first time homozygous microdeletions of different sizes affecting the OSTM1 gene in two unrelated consanguineous families with children suffering from neuronopathic infantile malignant osteopetrosi
    Title: Severe neuronopathic autosomal recessive osteopetrosis due to homozygous deletions affecting OSTM1.
  10. The authors show that both the aminoterminus and transmembrane span of the Ostm1 beta-subunit are required for ClC-7 Cl(-)/H(+)-exchange, whereas the Ostm1 transmembrane domain suffices for its ClC-7-dependent trafficking to lysosomes.
    Title: ClC-7 is a slowly voltage-gated 2Cl(-)/1H(+)-exchanger and requires Ostm1 for transport activity.
Submit: New GeneRIF Correction See all GeneRIFs (17)

Phenotypes

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Find tests for this gene in the NIH Genetic Testing Registry (GTR)

Review eQTL and phenotype association data in this region using PheGenI

Associated conditions

Description Tests
Autosomal recessive osteopetrosis 5
MedGen: C1968603 OMIM: 259720 GeneReviews: Not available
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Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Pathways from PubChem

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Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
involved_in osteoclast differentiation IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in transepithelial chloride transport IDA
Inferred from Direct Assay
more info
 PubMed 
Component Evidence Code Pubs
part_of chloride channel complex IPI
Inferred from Physical Interaction
more info
 PubMed 
is_active_in cytosol IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in lysosomal membrane IDA
Inferred from Direct Assay
more info
 PubMed 
located_in lysosomal membrane TAS
Traceable Author Statement
more info
  

General protein information

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Preferred Names
osteopetrosis-associated transmembrane protein 1
Names
CLCN7 accessory beta subunit
GAIP-interacting protein N terminus
chloride channel 7 beta subunit
grey-lethal osteopetrosis
osteopetrosis associated transmembrane protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_007262.1 RefSeqGene

    Range
    4997..38329
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_014028.4 → NP_054747.2  osteopetrosis-associated transmembrane protein 1 precursor

    See identical proteins and their annotated locations for NP_054747.2

    Status: REVIEWED

    Source sequence(s)
    AA428166, AF533891, AJ420489, AV715475, BE218267, BI668275, BQ716123, Z98200
    Consensus CDS
    CCDS5062.1
    UniProtKB/Swiss-Prot
    E1P5E3, Q5R391, Q6PCA7, Q7RTW6, Q86WC4, Q8NC29, Q8TC82, Q9Y2S9
    UniProtKB/TrEMBL
    A0A8V8TPT2
    Related
    ENSP00000193322.3, ENST00000193322.8
    Conserved Domains (1) summary
    pfam09777
    Location:84 → 328
    OSTMP1; Osteopetrosis-associated transmembrane protein 1 precursor

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

    Range
    108041409..108074741 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_047418679.1 → XP_047274635.1  osteopetrosis-associated transmembrane protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A8V8TPT7
    Related
    ENSP00000514450.1, ENST00000699577.1

  2. XM_047418680.1 → XP_047274636.1  osteopetrosis-associated transmembrane protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A8V8TNX7
    Related
    ENSP00000514451.1, ENST00000699578.1

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060930.1 Alternate T2T-CHM13v2.0

    Range
    109218461..109251819 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054355240.1 → XP_054211215.1  osteopetrosis-associated transmembrane protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A8V8TPT7

  2. XM_054355241.1 → XP_054211216.1  osteopetrosis-associated transmembrane protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A8V8TNX7
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q86WC4.1 GenPept UniProtKB/Swiss-Prot:Q86WC4

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