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Csnk1e casein kinase 1, epsilon [ Mus musculus (house mouse) ]

Gene ID: 27373, updated on 2-Nov-2024

Summary

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Official Symbol
Csnk1eprovided by MGI
Official Full Name
casein kinase 1, epsilonprovided by MGI
Primary source
MGI:MGI:1351660
See related
Ensembl:ENSMUSG00000022433 AllianceGenome:MGI:1351660
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
tau; CKIe; CK1epsilon; KC1epsilon
Summary
The protein encoded by this gene is a serine/threonine protein kinase and a member of the casein kinase I protein family, whose members have been implicated in the control of cytoplasmic and nuclear processes, including DNA replication and repair. The encoded protein is found in the cytoplasm as a monomer and can phosphorylate a variety of proteins, including itself. This protein has been shown to phosphorylate period, a circadian rhythm protein. Three transcript variants encoding two different isoforms have been found for this gene. [provided by RefSeq, Feb 2014]
Expression
Broad expression in whole brain E14.5 (RPKM 28.8), CNS E14 (RPKM 28.1) and 25 other tissues See more
Orthologs
human all
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Genomic context

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See Csnk1e in Genome Data Viewer
Location:
15 37.71 cM; 15 E1
Exon count:
19
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 15 NC_000081.7 (79302054..79339779, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 15 NC_000081.6 (79417852..79455579, complement)

Chromosome 15 - NC_000081.7Genomic Context describing neighboring genes Neighboring gene v-maf musculoaponeurotic fibrosarcoma oncogene family, protein F (avian) Neighboring gene transmembrane protein 184b Neighboring gene microRNA 1943 Neighboring gene STARR-seq mESC enhancer starr_39180 Neighboring gene STARR-seq mESC enhancer starr_39181 Neighboring gene predicted gene 16059 Neighboring gene STARR-seq mESC enhancer starr_39185 Neighboring gene STARR-seq mESC enhancer starr_39186 Neighboring gene predicted gene, 41359 Neighboring gene potassium inwardly-rectifying channel, subfamily J, member 4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. The circadian clock gene Csnk1e regulates rapid eye movement sleep amount, and nonrapid eye movement sleep architecture in mice. Zhou L, et al. Sleep, 2014 Apr 1. PMID 24744456, Free PMC Article
  2. Casein kinase 1 epsilon and circadian misalignment impact affective behaviours in mice. Zhou L, et al. Eur J Neurosci, 2022 May. PMID 34514665
  3. Natural selection against a circadian clock gene mutation in mice. Spoelstra K, et al. Proc Natl Acad Sci U S A, 2016 Jan 19. PMID 26715747, Free PMC Article
  4. Analysis of cell type-specific expression of CK1 epsilon in various tissues of young adult BALB/c Mice and in mammary tumors of SV40 T-Ag-transgenic mice. Utz AC, et al. J Histochem Cytochem, 2010 Jan. PMID 19755715, Free PMC Article
  5. Casein kinase 1-epsilon deletion increases mu opioid receptor-dependent behaviors and binge eating1. Goldberg LR, et al. Genes Brain Behav, 2017 Sep. PMID 28594147, Free PMC Article

See all (105) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Involvement of casein kinase 1 epsilon/delta (Csnk1e/d) in the pathogenesis of familial Parkinson's disease caused by CHCHD2.
    Title: Involvement of casein kinase 1 epsilon/delta (Csnk1e/d) in the pathogenesis of familial Parkinson's disease caused by CHCHD2.
  2. Casein kinase 1 epsilon and circadian misalignment impact affective behaviours in mice.
    Title: Casein kinase 1 epsilon and circadian misalignment impact affective behaviours in mice.
  3. Therapeutic Targeting of Casein Kinase 1delta/epsilon in an Alzheimer's Disease Mouse Model.
    Title: Therapeutic Targeting of Casein Kinase 1δ/ε in an Alzheimer's Disease Mouse Model.
  4. CK1delta/epsilon disruption mouse had a long (27.4 h) behavioral period to which peripheral clocks entrained in vivo, albeit with an advanced phase ( approximately 6 h).
    Title: Desynchrony between brain and peripheral clocks caused by CK1δ/ε disruption in GABA neurons does not lead to adverse metabolic outcomes.
  5. Studied roles of CK1delta and CK1e in regulation of PER2 in circadian rhythm.
    Title: CK1δ/ε protein kinase primes the PER2 circadian phosphoswitch.
  6. the impact of obesity on the circadian system in mice at a behavioural and molecular level was assessed, and determined whether pharmacological targeting of casein kinase 1delta and epsilon (CK1delta/epsilon), key regulators of the circadian clock, can confer metabolic benefit.
    Title: Targeting of the circadian clock via CK1δ/ε to improve glucose homeostasis in obesity.
  7. Csnk1e deletion increased mu opioid receptor-dependent behaviors.
    Title: Casein kinase 1-epsilon deletion increases mu opioid receptor-dependent behaviors and binge eating1.
  8. Here, the authors identify another Wnt signaling amplifier, CKIepsilon, which is specifically upregulated in intestinal stem cells and is essential for intestinal stem cell maintenance, especially in the absence of its close isoform CKIdelta.
    Title: Casein kinase 1-epsilon or 1-delta required for Wnt-mediated intestinal stem cell maintenance.
  9. Linkage mapping, transcript covariance and pharmacological testing suggest that genetic variation affecting Csnk1e may contribute to individual differences in von Frey filament response.
    Title: Systems genetic and pharmacological analysis identifies candidate genes underlying mechanosensation in the von Frey test.
  10. Findings establish CK1varepsilon as a regulator of antiviral innate immune responses and indicate a novel mechanism of immunoregulation that involves CK1varepsilon-mediated phosphorylation of TRAF3.
    Title: The kinase CK1ɛ controls the antiviral immune response by phosphorylating the signaling adaptor TRAF3.
Submit: New GeneRIF Correction See all GeneRIFs (28)

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (3) 
  • Gene trapped (2) 
  • Targeted (4)  1 citation

Pathways from PubChem

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Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
  
enables histone H2AS1 kinase activity IEA
Inferred from Electronic Annotation
more info
  
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
enables protein kinase activity IDA
Inferred from Direct Assay
more info
 PubMed 
enables protein kinase activity IGI
Inferred from Genetic Interaction
more info
 PubMed 
enables protein kinase activity IMP
Inferred from Mutant Phenotype
more info
 PubMed 
enables protein kinase activity ISO
Inferred from Sequence Orthology
more info
  
enables protein serine kinase activity IEA
Inferred from Electronic Annotation
more info
  
enables protein serine/threonine kinase activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables protein serine/threonine kinase activity ISO
Inferred from Sequence Orthology
more info
  
enables protein serine/threonine kinase activity TAS
Traceable Author Statement
more info
  
Process Evidence Code Pubs
involved_in canonical Wnt signaling pathway IEA
Inferred from Electronic Annotation
more info
  
involved_in cellular response to nerve growth factor stimulus IEA
Inferred from Electronic Annotation
more info
  
involved_in chromatin remodeling IEA
Inferred from Electronic Annotation
more info
  
involved_in circadian behavior IEA
Inferred from Electronic Annotation
more info
  
involved_in circadian behavior ISO
Inferred from Sequence Orthology
more info
  
involved_in circadian regulation of gene expression IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within circadian rhythm TAS
Traceable Author Statement
more info
 PubMed 
involved_in endocytosis IBA
Inferred from Biological aspect of Ancestor
more info
  
acts_upstream_of_or_within negative regulation of Wnt signaling pathway IGI
Inferred from Genetic Interaction
more info
 PubMed 
involved_in positive regulation of Wnt signaling pathway IGI
Inferred from Genetic Interaction
more info
 PubMed 
involved_in positive regulation of amyloid-beta formation IEA
Inferred from Electronic Annotation
more info
  
involved_in positive regulation of amyloid-beta formation ISO
Inferred from Sequence Orthology
more info
  
involved_in positive regulation of canonical Wnt signaling pathway IBA
Inferred from Biological aspect of Ancestor
more info
  
acts_upstream_of_or_within positive regulation of canonical Wnt signaling pathway IGI
Inferred from Genetic Interaction
more info
 PubMed 
involved_in positive regulation of non-canonical Wnt signaling pathway IGI
Inferred from Genetic Interaction
more info
 PubMed 
involved_in positive regulation of proteasomal ubiquitin-dependent protein catabolic process IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in positive regulation of proteasomal ubiquitin-dependent protein catabolic process IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within protein localization IDA
Inferred from Direct Assay
more info
 PubMed 
acts_upstream_of_or_within protein phosphorylation IDA
Inferred from Direct Assay
more info
 PubMed 
involved_in protein phosphorylation IDA
Inferred from Direct Assay
more info
 PubMed 
involved_in protein phosphorylation IGI
Inferred from Genetic Interaction
more info
 PubMed 
involved_in protein phosphorylation IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in regulation of circadian rhythm IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in regulation of protein localization IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in signal transduction IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in cytoplasm ISO
Inferred from Sequence Orthology
more info
  
located_in cytosol TAS
Traceable Author Statement
more info
  
located_in growth cone IEA
Inferred from Electronic Annotation
more info
  
located_in growth cone ISO
Inferred from Sequence Orthology
more info
  
located_in neuronal cell body IEA
Inferred from Electronic Annotation
more info
  
located_in neuronal cell body ISO
Inferred from Sequence Orthology
more info
  
located_in nucleoplasm TAS
Traceable Author Statement
more info
  
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in nucleus IDA
Inferred from Direct Assay
more info
 PubMed 
part_of ribonucleoprotein complex IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
casein kinase I isoform epsilon; casein kinase I
Names
CKI-epsilon
KC1 epsilon
NP_001276827.1
NP_001276828.1
NP_001346791.1
NP_001346792.1
NP_001398803.1
NP_001398804.1
NP_001398805.1
NP_001398806.1
NP_001398807.1
NP_001398808.1
NP_001398809.1
NP_001398810.1
NP_038795.3
XP_006521106.1
XP_011243952.1
XP_011243953.1
XP_011243954.1
XP_011243955.1
XP_011243956.1
XP_017172146.1
XP_017172149.1
XP_030104453.1
XP_030104457.1
XP_036015339.1
XP_036015340.1
XP_036015341.1
XP_036015342.1
XP_036015343.1
XP_036015344.1
XP_036015345.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001289898.3 → NP_001276827.1  casein kinase I isoform epsilon isoform a

    See identical proteins and their annotated locations for NP_001276827.1

    Status: VALIDATED

    Source sequence(s)
    AC165278
    Consensus CDS
    CCDS27640.1
    UniProtKB/Swiss-Prot
    Q8R389, Q9JMK2
    UniProtKB/TrEMBL
    Q9QUI3
    Related
    ENSMUSP00000113341.2, ENSMUST00000117786.9
    Conserved Domains (1) summary
    cd14125
    Location:8 → 282
    STKc_CK1_delta_epsilon; Catalytic domain of the Serine/Threonine protein kinases, Casein Kinase 1 delta and epsilon

  2. NM_001289899.2 → NP_001276828.1  casein kinase I isoform epsilon isoform b

    See identical proteins and their annotated locations for NP_001276828.1

    Status: VALIDATED

    Source sequence(s)
    AC165278
    Consensus CDS
    CCDS70646.1
    UniProtKB/TrEMBL
    Q3TYE1
    Related
    ENSMUSP00000113096.2, ENSMUST00000122044.8
    Conserved Domains (1) summary
    cd14125
    Location:8 → 282
    STKc_CK1_delta_epsilon; Catalytic domain of the Serine/Threonine protein kinases, Casein Kinase 1 delta and epsilon

  3. NM_001359862.2 → NP_001346791.1  casein kinase I isoform epsilon isoform a

    Status: VALIDATED

    Source sequence(s)
    AC165278
    Consensus CDS
    CCDS27640.1
    UniProtKB/Swiss-Prot
    Q8R389, Q9JMK2
    UniProtKB/TrEMBL
    Q9QUI3
    Conserved Domains (1) summary
    cd14125
    Location:8 → 282
    STKc_CK1_delta_epsilon; Catalytic domain of the Serine/Threonine protein kinases, Casein Kinase 1 delta and epsilon

  4. NM_001359863.2 → NP_001346792.1  casein kinase I isoform epsilon isoform a

    Status: VALIDATED

    Source sequence(s)
    AC165278
    Consensus CDS
    CCDS27640.1
    UniProtKB/Swiss-Prot
    Q8R389, Q9JMK2
    UniProtKB/TrEMBL
    Q9QUI3
    Conserved Domains (1) summary
    cd14125
    Location:8 → 282
    STKc_CK1_delta_epsilon; Catalytic domain of the Serine/Threonine protein kinases, Casein Kinase 1 delta and epsilon

  5. NM_001411874.1 → NP_001398803.1  casein kinase I isoform epsilon isoform b

    Status: VALIDATED

    Source sequence(s)
    AC165278
    UniProtKB/TrEMBL
    Q3TYE1

  6. NM_001411875.1 → NP_001398804.1  casein kinase I isoform epsilon isoform b

    Status: VALIDATED

    Source sequence(s)
    AC165278
    UniProtKB/TrEMBL
    Q3TYE1

  7. NM_001411876.1 → NP_001398805.1  casein kinase I isoform epsilon isoform a

    Status: VALIDATED

    Source sequence(s)
    AC165278
    UniProtKB/Swiss-Prot
    Q8R389, Q9JMK2

  8. NM_001411877.1 → NP_001398806.1  casein kinase I isoform epsilon isoform a

    Status: VALIDATED

    Source sequence(s)
    AC165278
    UniProtKB/Swiss-Prot
    Q8R389, Q9JMK2

  9. NM_001411878.1 → NP_001398807.1  casein kinase I isoform epsilon isoform a

    Status: VALIDATED

    Source sequence(s)
    AC165278
    UniProtKB/Swiss-Prot
    Q8R389, Q9JMK2

  10. NM_001411879.1 → NP_001398808.1  casein kinase I isoform epsilon isoform a

    Status: VALIDATED

    Source sequence(s)
    AC165278
    UniProtKB/Swiss-Prot
    Q8R389, Q9JMK2

  11. NM_001411880.1 → NP_001398809.1  casein kinase I isoform epsilon isoform a

    Status: VALIDATED

    Source sequence(s)
    AC165278
    UniProtKB/Swiss-Prot
    Q8R389, Q9JMK2

  12. NM_001411881.1 → NP_001398810.1  casein kinase I isoform epsilon isoform c

    Status: VALIDATED

    Source sequence(s)
    AC165278

  13. NM_013767.8 → NP_038795.3  casein kinase I isoform epsilon isoform a

    See identical proteins and their annotated locations for NP_038795.3

    Status: VALIDATED

    Source sequence(s)
    AC165278
    Consensus CDS
    CCDS27640.1
    UniProtKB/Swiss-Prot
    Q8R389, Q9JMK2
    UniProtKB/TrEMBL
    Q9QUI3
    Related
    ENSMUSP00000113975.2, ENSMUST00000120859.9
    Conserved Domains (1) summary
    cd14125
    Location:8 → 282
    STKc_CK1_delta_epsilon; Catalytic domain of the Serine/Threonine protein kinases, Casein Kinase 1 delta and epsilon

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000081.7 Reference GRCm39 C57BL/6J

    Range
    79302054..79339779 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011245651.2 → XP_011243953.1  casein kinase I isoform X1

    See identical proteins and their annotated locations for XP_011243953.1

    Conserved Domains (1) summary
    cd14125
    Location:8 → 282
    STKc_CK1_delta_epsilon; Catalytic domain of the Serine/Threonine protein kinases, Casein Kinase 1 delta and epsilon

  2. XM_036159448.1 → XP_036015341.1  casein kinase I isoform X1

    Conserved Domains (1) summary
    cd14125
    Location:8 → 282
    STKc_CK1_delta_epsilon; Catalytic domain of the Serine/Threonine protein kinases, Casein Kinase 1 delta and epsilon

  3. XM_011245652.3 → XP_011243954.1  casein kinase I isoform X1

    See identical proteins and their annotated locations for XP_011243954.1

    Conserved Domains (1) summary
    cd14125
    Location:8 → 282
    STKc_CK1_delta_epsilon; Catalytic domain of the Serine/Threonine protein kinases, Casein Kinase 1 delta and epsilon

  4. XM_011245653.4 → XP_011243955.1  casein kinase I isoform X1

    See identical proteins and their annotated locations for XP_011243955.1

    Conserved Domains (1) summary
    cd14125
    Location:8 → 282
    STKc_CK1_delta_epsilon; Catalytic domain of the Serine/Threonine protein kinases, Casein Kinase 1 delta and epsilon

  5. XM_017316657.2 → XP_017172146.1  casein kinase I isoform X2

    UniProtKB/Swiss-Prot
    Q8R389, Q9JMK2
    UniProtKB/TrEMBL
    Q9QUI3
    Conserved Domains (1) summary
    cd14125
    Location:8 → 282
    STKc_CK1_delta_epsilon; Catalytic domain of the Serine/Threonine protein kinases, Casein Kinase 1 delta and epsilon

  6. XM_006521043.4 → XP_006521106.1  casein kinase I isoform X1

    See identical proteins and their annotated locations for XP_006521106.1

    Conserved Domains (1) summary
    cd14125
    Location:8 → 282
    STKc_CK1_delta_epsilon; Catalytic domain of the Serine/Threonine protein kinases, Casein Kinase 1 delta and epsilon

  7. XM_036159446.1 → XP_036015339.1  casein kinase I isoform X1

    Conserved Domains (1) summary
    cd14125
    Location:8 → 282
    STKc_CK1_delta_epsilon; Catalytic domain of the Serine/Threonine protein kinases, Casein Kinase 1 delta and epsilon

  8. XM_036159451.1 → XP_036015344.1  casein kinase I isoform X2

    UniProtKB/Swiss-Prot
    Q8R389, Q9JMK2
    UniProtKB/TrEMBL
    Q9QUI3
    Conserved Domains (1) summary
    cd14125
    Location:8 → 282
    STKc_CK1_delta_epsilon; Catalytic domain of the Serine/Threonine protein kinases, Casein Kinase 1 delta and epsilon

  9. XM_011245650.4 → XP_011243952.1  casein kinase I isoform X1

    See identical proteins and their annotated locations for XP_011243952.1

    Conserved Domains (1) summary
    cd14125
    Location:8 → 282
    STKc_CK1_delta_epsilon; Catalytic domain of the Serine/Threonine protein kinases, Casein Kinase 1 delta and epsilon

  10. XM_030248593.1 → XP_030104453.1  casein kinase I isoform X1

    Conserved Domains (1) summary
    cd14125
    Location:8 → 282
    STKc_CK1_delta_epsilon; Catalytic domain of the Serine/Threonine protein kinases, Casein Kinase 1 delta and epsilon

  11. XM_036159447.1 → XP_036015340.1  casein kinase I isoform X1

    Conserved Domains (1) summary
    cd14125
    Location:8 → 282
    STKc_CK1_delta_epsilon; Catalytic domain of the Serine/Threonine protein kinases, Casein Kinase 1 delta and epsilon

  12. XM_011245654.4 → XP_011243956.1  casein kinase I isoform X1

    See identical proteins and their annotated locations for XP_011243956.1

    Conserved Domains (1) summary
    cd14125
    Location:8 → 282
    STKc_CK1_delta_epsilon; Catalytic domain of the Serine/Threonine protein kinases, Casein Kinase 1 delta and epsilon

  13. XM_036159450.1 → XP_036015343.1  casein kinase I isoform X2

    UniProtKB/Swiss-Prot
    Q8R389, Q9JMK2
    UniProtKB/TrEMBL
    Q9QUI3
    Conserved Domains (1) summary
    cd14125
    Location:8 → 282
    STKc_CK1_delta_epsilon; Catalytic domain of the Serine/Threonine protein kinases, Casein Kinase 1 delta and epsilon

  14. XM_036159452.1 → XP_036015345.1  casein kinase I isoform X2

    UniProtKB/Swiss-Prot
    Q8R389, Q9JMK2
    UniProtKB/TrEMBL
    Q9QUI3
    Conserved Domains (1) summary
    cd14125
    Location:8 → 282
    STKc_CK1_delta_epsilon; Catalytic domain of the Serine/Threonine protein kinases, Casein Kinase 1 delta and epsilon

  15. XM_036159449.1 → XP_036015342.1  casein kinase I isoform X2

    UniProtKB/Swiss-Prot
    Q8R389, Q9JMK2
    UniProtKB/TrEMBL
    Q9QUI3
    Conserved Domains (1) summary
    cd14125
    Location:8 → 282
    STKc_CK1_delta_epsilon; Catalytic domain of the Serine/Threonine protein kinases, Casein Kinase 1 delta and epsilon

  16. XM_030248597.2 → XP_030104457.1  casein kinase I isoform X2

    UniProtKB/Swiss-Prot
    Q8R389, Q9JMK2
    UniProtKB/TrEMBL
    Q9QUI3
    Conserved Domains (1) summary
    cd14125
    Location:8 → 282
    STKc_CK1_delta_epsilon; Catalytic domain of the Serine/Threonine protein kinases, Casein Kinase 1 delta and epsilon

  17. XM_017316660.2 → XP_017172149.1  casein kinase I isoform X3

    UniProtKB/TrEMBL
    Q3TYE1
    Conserved Domains (1) summary
    cd14125
    Location:8 → 282
    STKc_CK1_delta_epsilon; Catalytic domain of the Serine/Threonine protein kinases, Casein Kinase 1 delta and epsilon
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9JMK2.2 GenPept UniProtKB/Swiss-Prot:Q9JMK2

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