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LOC25502915 telomere repeat-binding factor 1 [ Medicago truncatula (barrel medic) ]

Gene ID: 25502915, updated on 7-Dec-2023

Summary

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Gene symbol
LOC25502915
Gene description
telomere repeat-binding factor 1
Locus tag
MtrunA17_Chr8g0384671
Gene type
protein coding
RefSeq status
MODEL
Organism
Medicago truncatula
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Medicago
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Genomic context

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See LOC25502915 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
11
Annotation release Status Assembly Chr Location
102 current MtrunA17r5.0-ANR (GCF_003473485.1) 8 NC_053049.1 (43585972..43597959)
101 previous assembly MedtrA17_4.0 (GCF_000219495.3) 8 NC_016414.2 (39453710..39465583)

Chromosome 8 - NC_053049.1Genomic Context describing neighboring genes Neighboring gene auxilin-related protein 2 Neighboring gene amino acid permease 3 Neighboring gene uncharacterized LOC11435722 Neighboring gene uncharacterized LOC11438987

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Expression dynamics of the Medicago truncatula transcriptome during the symbiotic interaction with Sinorhizobium meliloti: which role for nitric oxide? Boscari A, et al. Plant Physiol, 2013 Jan. PMID 23136381, Free PMC Article
  2. Dual RNA-Seq analysis of Medicago truncatula and the pea powdery mildew Erysiphe pisi uncovers distinct host transcriptional signatures during incompatible and compatible interactions and pathogen effector candidates. Gupta M, et al. Genomics, 2020 May. PMID 31837401

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables double-stranded telomeric DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in nucleosome assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of nucleosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
telomere repeat-binding factor 1
Names
myb transcription factor
myb-like DNA-binding domain protein
putative transcription factor MYB-HB-like family

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Medicago truncatula Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference MtrunA17r5.0-ANR Primary Assembly

Genomic

  1. NC_053049.1 Reference MtrunA17r5.0-ANR Primary Assembly

    Range
    43585972..43597959
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024772207.2 → XP_024627975.1  telomere repeat-binding factor 1 isoform X2

    UniProtKB/TrEMBL
    I3SH58
    Conserved Domains (2) summary
    smart00526
    Location:118 → 180
    H15; Domain in histone families 1 and 5
    cd11660
    Location:6 → 56
    SANT_TRF; Telomere repeat binding factor-like DNA-binding domains of the SANT/myb-like family

  2. XM_024772211.2 → XP_024627979.1  telomere repeat-binding factor 1 isoform X2

    UniProtKB/TrEMBL
    I3SH58
    Conserved Domains (2) summary
    smart00526
    Location:118 → 180
    H15; Domain in histone families 1 and 5
    cd11660
    Location:6 → 56
    SANT_TRF; Telomere repeat binding factor-like DNA-binding domains of the SANT/myb-like family

  3. XM_039829617.1 → XP_039685551.1  telomere repeat-binding factor 1 isoform X1

    UniProtKB/TrEMBL
    A0A072TVN7
    Conserved Domains (2) summary
    smart00526
    Location:118 → 180
    H15; Domain in histone families 1 and 5
    cd11660
    Location:6 → 56
    SANT_TRF; Telomere repeat binding factor-like DNA-binding domains of the SANT/myb-like family

  4. XM_039829618.1 → XP_039685552.1  telomere repeat-binding factor 1 isoform X1

    UniProtKB/TrEMBL
    A0A072TVN7
    Conserved Domains (2) summary
    smart00526
    Location:118 → 180
    H15; Domain in histone families 1 and 5
    cd11660
    Location:6 → 56
    SANT_TRF; Telomere repeat binding factor-like DNA-binding domains of the SANT/myb-like family

  5. XM_039829619.1 → XP_039685553.1  telomere repeat-binding factor 1 isoform X1

    UniProtKB/TrEMBL
    A0A072TVN7
    Conserved Domains (2) summary
    smart00526
    Location:118 → 180
    H15; Domain in histone families 1 and 5
    cd11660
    Location:6 → 56
    SANT_TRF; Telomere repeat binding factor-like DNA-binding domains of the SANT/myb-like family

  6. XM_039829620.1 → XP_039685554.1  telomere repeat-binding factor 1 isoform X1

    UniProtKB/TrEMBL
    A0A072TVN7
    Conserved Domains (2) summary
    smart00526
    Location:118 → 180
    H15; Domain in histone families 1 and 5
    cd11660
    Location:6 → 56
    SANT_TRF; Telomere repeat binding factor-like DNA-binding domains of the SANT/myb-like family

  7. XM_039829622.1 → XP_039685556.1  telomere repeat-binding factor 1 isoform X1

    UniProtKB/TrEMBL
    A0A072TVN7
    Conserved Domains (2) summary
    smart00526
    Location:118 → 180
    H15; Domain in histone families 1 and 5
    cd11660
    Location:6 → 56
    SANT_TRF; Telomere repeat binding factor-like DNA-binding domains of the SANT/myb-like family

  8. XM_039829621.1 → XP_039685555.1  telomere repeat-binding factor 1 isoform X1

    UniProtKB/TrEMBL
    A0A072TVN7
    Conserved Domains (2) summary
    smart00526
    Location:118 → 180
    H15; Domain in histone families 1 and 5
    cd11660
    Location:6 → 56
    SANT_TRF; Telomere repeat binding factor-like DNA-binding domains of the SANT/myb-like family

  9. XM_039829623.1 → XP_039685557.1  telomere repeat-binding factor 1 isoform X3

    UniProtKB/TrEMBL
    A0A072TU28, I3SH58
    Conserved Domains (2) summary
    smart00526
    Location:118 → 180
    H15; Domain in histone families 1 and 5
    cd11660
    Location:6 → 56
    SANT_TRF; Telomere repeat binding factor-like DNA-binding domains of the SANT/myb-like family
Nucleotide Protein
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