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LOC25500381 transcription factor bHLH87 [ Medicago truncatula (barrel medic) ]

Gene ID: 25500381, updated on 7-Dec-2023

Summary

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Gene symbol
LOC25500381
Gene description
transcription factor bHLH87
Locus tag
MtrunA17_Chr8g0341421
Gene type
protein coding
RefSeq status
MODEL
Organism
Medicago truncatula
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Medicago
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Genomic context

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See LOC25500381 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
3
Annotation release Status Assembly Chr Location
102 current MtrunA17r5.0-ANR (GCF_003473485.1) 8 NC_053049.1 (5018916..5021264, complement)
101 previous assembly MedtrA17_4.0 (GCF_000219495.3) 8 NC_016414.2 (5040362..5042725, complement)

Chromosome 8 - NC_053049.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC120577412 Neighboring gene vacuolar protein sorting-associated protein 26B Neighboring gene protein HEADING DATE 3B Neighboring gene glycosyltransferase BC10

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor bHLH87
Names
putative transcription factor bHLH family

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Medicago truncatula Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference MtrunA17r5.0-ANR Primary Assembly

Genomic

  1. NC_053049.1 Reference MtrunA17r5.0-ANR Primary Assembly

    Range
    5018916..5021264 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024771923.2 → XP_024627691.1  transcription factor bHLH87

    UniProtKB/TrEMBL
    A0A072TLG8
    Conserved Domains (1) summary
    smart00353
    Location:357 → 388
    HLH; helix loop helix domain

  2. XM_013588786.3 → XP_013444240.1  transcription factor bHLH87

    UniProtKB/TrEMBL
    A0A072TLG8
    Conserved Domains (1) summary
    smart00353
    Location:357 → 388
    HLH; helix loop helix domain
Nucleotide Protein
Heading Accession and Version

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