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LOC25498486 telomere repeat-binding protein 5 [ Medicago truncatula (barrel medic) ]

Gene ID: 25498486, updated on 22-Apr-2023

Summary

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Gene symbol
LOC25498486
Gene description
telomere repeat-binding protein 5
Locus tag
MtrunA17_Chr7g0238741
Gene type
protein coding
RefSeq status
MODEL
Organism
Medicago truncatula
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Medicago
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Genomic context

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See LOC25498486 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
12
Annotation release Status Assembly Chr Location
102 current MtrunA17r5.0-ANR (GCF_003473485.1) 7 NC_053048.1 (28833118..28839443)
101 previous assembly MedtrA17_4.0 (GCF_000219495.3) 7 NC_016413.2 (22384572..22390935)

Chromosome 7 - NC_053048.1Genomic Context describing neighboring genes Neighboring gene transfer RNA threonine (anticodon UGU) Neighboring gene oxysterol-binding protein-related protein 3A Neighboring gene transfer RNA threonine (anticodon UGU) Neighboring gene uncharacterized LOC25480396

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Dual RNA-Seq analysis of Medicago truncatula and the pea powdery mildew Erysiphe pisi uncovers distinct host transcriptional signatures during incompatible and compatible interactions and pathogen effector candidates. Gupta M, et al. Genomics, 2020 May. PMID 31837401

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
telomere repeat-binding protein 5
Names
putative transcription factor MYB-HB-like family

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Medicago truncatula Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference MtrunA17r5.0-ANR Primary Assembly

Genomic

  1. NC_053048.1 Reference MtrunA17r5.0-ANR Primary Assembly

    Range
    28833118..28839443
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039827748.1 → XP_039683682.1  telomere repeat-binding protein 5 isoform X3

    Conserved Domains (2) summary
    cd11660
    Location:499 → 549
    SANT_TRF; Telomere repeat binding factor-like DNA-binding domains of the SANT/myb-like family
    pfam18036
    Location:310 → 380
    Ubiquitin_4; Ubiquitin-like domain

  2. XM_039827747.1 → XP_039683681.1  telomere repeat-binding protein 5 isoform X2

    Conserved Domains (2) summary
    cd11660
    Location:513 → 563
    SANT_TRF; Telomere repeat binding factor-like DNA-binding domains of the SANT/myb-like family
    pfam18036
    Location:324 → 394
    Ubiquitin_4; Ubiquitin-like domain

  3. XM_013593410.3 → XP_013448864.1  telomere repeat-binding protein 5 isoform X1

    UniProtKB/TrEMBL
    A0A072U0H7
    Conserved Domains (2) summary
    cd11660
    Location:520 → 570
    SANT_TRF; Telomere repeat binding factor-like DNA-binding domains of the SANT/myb-like family
    pfam18036
    Location:331 → 401
    Ubiquitin_4; Ubiquitin-like domain

  4. XM_039827746.1 → XP_039683680.1  telomere repeat-binding protein 5 isoform X1

    UniProtKB/TrEMBL
    A0A072U0H7
    Conserved Domains (2) summary
    cd11660
    Location:520 → 570
    SANT_TRF; Telomere repeat binding factor-like DNA-binding domains of the SANT/myb-like family
    pfam18036
    Location:331 → 401
    Ubiquitin_4; Ubiquitin-like domain

  5. XM_024769952.2 → XP_024625720.1  telomere repeat-binding protein 5 isoform X1

    UniProtKB/TrEMBL
    A0A072U0H7
    Conserved Domains (2) summary
    cd11660
    Location:520 → 570
    SANT_TRF; Telomere repeat binding factor-like DNA-binding domains of the SANT/myb-like family
    pfam18036
    Location:331 → 401
    Ubiquitin_4; Ubiquitin-like domain

  6. XM_039827745.1 → XP_039683679.1  telomere repeat-binding protein 5 isoform X1

    UniProtKB/TrEMBL
    A0A072U0H7
    Conserved Domains (2) summary
    cd11660
    Location:520 → 570
    SANT_TRF; Telomere repeat binding factor-like DNA-binding domains of the SANT/myb-like family
    pfam18036
    Location:331 → 401
    Ubiquitin_4; Ubiquitin-like domain
Nucleotide Protein
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