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LOC25493543 homeobox-leucine zipper protein HAT22 [ Medicago truncatula (barrel medic) ]

Gene ID: 25493543, updated on 7-Dec-2023

Summary

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Gene symbol
LOC25493543
Gene description
homeobox-leucine zipper protein HAT22
Locus tag
MtrunA17_Chr4g0054421
Gene type
protein coding
RefSeq status
MODEL
Organism
Medicago truncatula
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Medicago
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Genomic context

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See LOC25493543 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
3
Annotation release Status Assembly Chr Location
102 current MtrunA17r5.0-ANR (GCF_003473485.1) 4 NC_053045.1 (48218663..48220327)
101 previous assembly MedtrA17_4.0 (GCF_000219495.3) 4 NC_016410.2 (40299163..40300851)

Chromosome 4 - NC_053045.1Genomic Context describing neighboring genes Neighboring gene protein CROWDED NUCLEI 4 Neighboring gene lysosomal Pro-X carboxypeptidase Neighboring gene probable xyloglucan endotransglucosylase/hydrolase protein 7 Neighboring gene probable xyloglucan endotransglucosylase/hydrolase protein 6

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Expression dynamics of the Medicago truncatula transcriptome during the symbiotic interaction with Sinorhizobium meliloti: which role for nitric oxide? Boscari A, et al. Plant Physiol, 2013 Jan. PMID 23136381, Free PMC Article
  2. Dual RNA-Seq analysis of Medicago truncatula and the pea powdery mildew Erysiphe pisi uncovers distinct host transcriptional signatures during incompatible and compatible interactions and pathogen effector candidates. Gupta M, et al. Genomics, 2020 May. PMID 31837401

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
homeobox-leucine zipper protein HAT22
Names
homeobox associated leucine zipper protein
putative transcription factor Homobox-WOX family

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Medicago truncatula Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference MtrunA17r5.0-ANR Primary Assembly

Genomic

  1. NC_053045.1 Reference MtrunA17r5.0-ANR Primary Assembly

    Range
    48218663..48220327
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_013602061.3 → XP_013457515.1  homeobox-leucine zipper protein HAT22

    UniProtKB/TrEMBL
    A0A072UQB3
    Conserved Domains (2) summary
    smart00340
    Location:182 → 225
    HALZ; homeobox associated leucin zipper
    smart00389
    Location:126 → 180
    HOX; Homeodomain
Nucleotide Protein
Heading Accession and Version

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