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LOC25492896 transcription factor-like protein DPB [ Medicago truncatula (barrel medic) ]

Gene ID: 25492896, updated on 7-Dec-2023

Summary

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Gene symbol
LOC25492896
Gene description
transcription factor-like protein DPB
Locus tag
MtrunA17_Chr4g0039751
Gene type
protein coding
RefSeq status
MODEL
Organism
Medicago truncatula
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Medicago
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Genomic context

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See LOC25492896 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
9
Annotation release Status Assembly Chr Location
102 current MtrunA17r5.0-ANR (GCF_003473485.1) 4 NC_053045.1 (37847106..37851324)
101 previous assembly MedtrA17_4.0 (GCF_000219495.3) 4 NC_016410.2 (29870642..29874859)

Chromosome 4 - NC_053045.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112421266 Neighboring gene transcription factor-like protein DPB Neighboring gene NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial Neighboring gene ATPase family AAA domain-containing protein 3C

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Dual RNA-Seq analysis of Medicago truncatula and the pea powdery mildew Erysiphe pisi uncovers distinct host transcriptional signatures during incompatible and compatible interactions and pathogen effector candidates. Gupta M, et al. Genomics, 2020 May. PMID 31837401
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II transcription regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of cell cycle IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of transcription regulator complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor-like protein DPB
Names
putative transcription factor E2F-DP family
transcription factor DP, E2 dimerization partner protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Medicago truncatula Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference MtrunA17r5.0-ANR Primary Assembly

Genomic

  1. NC_053045.1 Reference MtrunA17r5.0-ANR Primary Assembly

    Range
    37847106..37851324
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024782864.2 → XP_024638632.1  transcription factor-like protein DPB isoform X2

    Conserved Domains (3) summary
    cd14458
    Location:180 → 221
    DP_DD; coiled coil [structural motif]
    pfam02319
    Location:93 → 175
    E2F_TDP; E2F/DP family winged-helix DNA-binding domain
    cl07405
    Location:180 → 221
    DP_DD; Dimerization domain of DP

  2. XM_013601176.3 → XP_013456630.1  transcription factor-like protein DPB isoform X1

    UniProtKB/TrEMBL
    A0A072UMP7
    Conserved Domains (3) summary
    cd14458
    Location:180 → 226
    DP_DD; coiled coil [structural motif]
    pfam02319
    Location:93 → 175
    E2F_TDP; E2F/DP family winged-helix DNA-binding domain
    pfam08781
    Location:182 → 285
    DP; Transcription factor DP
Nucleotide Protein
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