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LOC25490007 homeobox-leucine zipper protein HAT9 [ Medicago truncatula (barrel medic) ]

Gene ID: 25490007, updated on 7-Dec-2023

Summary

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Gene symbol
LOC25490007
Gene description
homeobox-leucine zipper protein HAT9
Locus tag
MtrunA17_Chr3g0135331
Gene type
protein coding
RefSeq status
MODEL
Organism
Medicago truncatula
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Medicago
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Genomic context

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See LOC25490007 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
3
Annotation release Status Assembly Chr Location
102 current MtrunA17r5.0-ANR (GCF_003473485.1) 3 NC_053044.1 (51326746..51328574)
101 previous assembly MedtrA17_4.0 (GCF_000219495.3) 3 NC_016409.2 (47873974..47875798)

Chromosome 3 - NC_053044.1Genomic Context describing neighboring genes Neighboring gene transcription factor RAX3 Neighboring gene branched-chain-amino-acid aminotransferase 2, chloroplastic Neighboring gene endo-1,4-beta-xylanase 1 Neighboring gene zinc finger CCCH domain-containing protein 20

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Aging in legume symbiosis. A molecular view on nodule senescence in Medicago truncatula. Van de Velde W, et al. Plant Physiol, 2006 Jun. PMID 16648219, Free PMC Article
  2. Dual RNA-Seq analysis of Medicago truncatula and the pea powdery mildew Erysiphe pisi uncovers distinct host transcriptional signatures during incompatible and compatible interactions and pathogen effector candidates. Gupta M, et al. Genomics, 2020 May. PMID 31837401
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
homeobox-leucine zipper protein HAT9
Names
homeobox associated leucine zipper protein
putative transcription factor Homobox-WOX family

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Medicago truncatula Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference MtrunA17r5.0-ANR Primary Assembly

Genomic

  1. NC_053044.1 Reference MtrunA17r5.0-ANR Primary Assembly

    Range
    51326746..51328574
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_013606377.3 → XP_013461831.1  homeobox-leucine zipper protein HAT9

    UniProtKB/TrEMBL
    A0A072V2J8, I3RZA3
    Conserved Domains (2) summary
    pfam00046
    Location:148 → 198
    Homeobox; Homeobox domain
    cl23880
    Location:200 → 235
    HALZ; Homeobox associated leucine zipper
Nucleotide Protein
Heading Accession and Version

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