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vps17 retromer complex subunit Vps17 [ Schizosaccharomyces pombe (fission yeast) ]

Gene ID: 2543324, updated on 18-Sep-2024

Summary

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Official Symbol
vps17
Official Full Name
retromer complex subunit Vps17
Primary source
PomBase:SPAPJ696.01c
Locus tag
SPOM_SPAPJ696.01C
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Schizosaccharomyces pombe (strain: 972h-)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
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Genomic context

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See vps17 in Genome Data Viewer
Location:
chromosome: I
Exon count:
4
Sequence:
Chromosome: I; NC_003424.3 (719090..723641, complement)

Chromosome I - NC_003424.3Genomic Context describing neighboring genes Neighboring gene tRNA-Glu Neighboring gene ncRNA Neighboring gene NADPH-dependent diflavin oxidoreductase Tah18 Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene actin cortical patch component Lsb4

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003424.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sorting nexin homologues are targets of phosphatidylinositol 3-phosphate in sporulation of Schizosaccharomyces pombe. Koga T, et al. Genes Cells, 2004 Jun. PMID 15189449
  2. Vacuolar protein sorting receptor in Schizosaccharomyces pombe. Iwaki T, et al. Microbiology (Reading), 2006 May. PMID 16622069
  3. Large scale screening of genetic interaction with sgf73(+) in fission yeast. Guo Y, et al. Yi Chuan, 2014 Jul. PMID 25076038
  4. Proximity-dependent biotinylation mediated by TurboID to identify protein-protein interaction networks in yeast. Larochelle M, et al. J Cell Sci, 2019 May 31. PMID 31064814
  5. Significant conservation of synthetic lethal genetic interaction networks between distantly related eukaryotes. Dixon SJ, et al. Proc Natl Acad Sci U S A, 2008 Oct 28. PMID 18931302, Free PMC Article

See all (14) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Gene Ontology Provided by PomBase

Function Evidence Code Pubs
enables phosphatidylinositol-3-phosphate binding IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
involved_in ascospore-type prospore membrane formation IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in intracellular protein transport IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in intracellular protein transport IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in retrograde transport, endosome to Golgi IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in retrograde transport, endosome to Golgi IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in vesicle-mediated transport IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
is_active_in cytosol HDA PubMed 
is_active_in endosome IBA
Inferred from Biological aspect of Ancestor
more info
  
is_active_in nucleus HDA PubMed 
is_active_in prospore membrane IDA
Inferred from Direct Assay
more info
 PubMed 
part_of retromer complex IMP
Inferred from Mutant Phenotype
more info
 PubMed 
part_of retromer, tubulation complex IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
retromer complex subunit Vps17

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003424.3 Reference assembly

    Range
    719090..723641 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001018446.3 → NP_593047.1  retromer complex subunit Vps17 [Schizosaccharomyces pombe]

    See identical proteins and their annotated locations for NP_593047.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    Q9URW7
    Conserved Domains (2) summary
    cd06891
    Location:73 → 209
    PX_Vps17p; The phosphoinositide binding Phox Homology domain of yeast sorting nexin Vps17p
    cl12013
    Location:224 → 453
    BAR; The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature
Nucleotide Protein
Heading Accession and Version

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