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red1 protein Red1 [ Schizosaccharomyces pombe (fission yeast) ]

Gene ID: 2543254, updated on 18-Sep-2024

Summary

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Official Symbol
red1
Official Full Name
protein Red1
Primary source
PomBase:SPAC1006.03c
Locus tag
SPOM_SPAC1006.03C
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Schizosaccharomyces pombe (strain: 972h-)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
Also known as
iss3
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Genomic context

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See red1 in Genome Data Viewer
Location:
chromosome: I
Exon count:
4
Sequence:
Chromosome: I; NC_003424.3 (5070931..5073898, complement)

Chromosome I - NC_003424.3Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene serine protease Psp3 Neighboring gene ASTRA-associated protein 1 Asa1 Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene protein mcp3 Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003424.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Meiotic gene silencing complex MTREC/NURS recruits the nuclear exosome to YTH-RNA-binding protein Mmi1. Shichino Y, et al. PLoS Genet, 2020 Feb. PMID 32012158, Free PMC Article
  2. Meiotic long non-coding meiRNA accumulates as a dot at its genetic locus facilitated by Mmi1 and plays as a decoy to lure Mmi1. Shichino Y, et al. Open Biol, 2014 Jun. PMID 24920274, Free PMC Article
  3. Structural analysis of Red1 as a conserved scaffold of the RNA-targeting MTREC/PAXT complex. Foucher AE, et al. Nat Commun, 2022 Aug 24. PMID 36002457, Free PMC Article
  4. YTH-RNA-binding protein prevents deleterious expression of meiotic proteins by tethering their mRNAs to nuclear foci. Shichino Y, et al. Elife, 2018 Feb 9. PMID 29424342, Free PMC Article
  5. The fission yeast MTREC and EJC orthologs ensure the maturation of meiotic transcripts during meiosis. Marayati BF, et al. RNA, 2016 Sep. PMID 27365210, Free PMC Article

See all (33) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by PomBase

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
enables protein-macromolecule adaptor activity EXP
Inferred from Experiment
more info
 PubMed 
enables protein-macromolecule adaptor activity IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
involved_in nuclear mRNA surveillance of spliceosomal pre-mRNA splicing EXP
Inferred from Experiment
more info
 PubMed 
involved_in nuclear mRNA surveillance of spliceosomal pre-mRNA splicing IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in nuclear-transcribed mRNA catabolic process, meiosis-specific transcripts EXP
Inferred from Experiment
more info
 PubMed 
involved_in nuclear-transcribed mRNA catabolic process, meiosis-specific transcripts IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in regulatory ncRNA-mediated gene silencing EXP
Inferred from Experiment
more info
 PubMed 
involved_in siRNA-independent facultative heterochromatin formation IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in sno(s)RNA processing IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
part_of MTREC complex IDA
Inferred from Direct Assay
more info
 PubMed 
part_of Mei2 nuclear dot complex IDA
Inferred from Direct Assay
more info
 PubMed 
is_active_in chromatin IDA
Inferred from Direct Assay
more info
 PubMed 
is_active_in cleavage body IDA
Inferred from Direct Assay
more info
 PubMed 
is_active_in heterochromatin island IDA
Inferred from Direct Assay
more info
 PubMed 
is_active_in nuclear body IDA
Inferred from Direct Assay
more info
 PubMed 
is_active_in nuclear exosome focus IDA
Inferred from Direct Assay
more info
 PubMed 
is_active_in nucleolar peripheral inclusion body IDA
Inferred from Direct Assay
more info
 PubMed 
is_active_in nucleus HDA PubMed 
is_active_in nucleus IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
protein Red1

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003424.3 Reference assembly

    Range
    5070931..5073898 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001020279.3 → NP_594850.2  protein Red1 [Schizosaccharomyces pombe]

    See identical proteins and their annotated locations for NP_594850.2

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    Q9UTR8, Q9UTX3
    Conserved Domains (2) summary
    PRK08581
    Location:16 → 198
    PRK08581; amidase domain-containing protein
    pfam10650
    Location:618 → 639
    zf-C3H1; Putative zinc-finger domain
Nucleotide Protein
Heading Accession and Version

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