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nup40 nucleoporin Nup40 [ Schizosaccharomyces pombe (fission yeast) ]

Gene ID: 2542466, updated on 18-Sep-2024

Summary

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Official Symbol
nup40
Official Full Name
nucleoporin Nup40
Primary source
PomBase:SPAC19E9.01c
Locus tag
SPOM_SPAC19E9.01C
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Schizosaccharomyces pombe (strain: 972h-)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
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Genomic context

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See nup40 in Genome Data Viewer
Location:
chromosome: I
Exon count:
2
Sequence:
Chromosome: I; NC_003424.3 (1351565..1353733, complement)

Chromosome I - NC_003424.3Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene cleavage and polyadenylation specificity factor complex subunit Rna14 Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene NIMA-like serine/threonine protein kinase Fin1 Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003424.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Identification of genes encoding putative nucleoporins and transport factors in the fission yeast Schizosaccharomyces pombe: a deletion analysis. Chen XQ, et al. Yeast, 2004 Apr 30. PMID 15116432
  2. Two-hybrid search for proteins that interact with Sad1 and Kms1, two membrane-bound components of the spindle pole body in fission yeast. Miki F, et al. Mol Genet Genomics, 2004 Jan. PMID 14655046
  3. Characterization of nuclear pore complex components in fission yeast Schizosaccharomyces pombe. Asakawa H, et al. Nucleus, 2014 Mar-Apr. PMID 24637836, Free PMC Article
  4. Virtual breakdown of the nuclear envelope in fission yeast meiosis. Asakawa H, et al. Curr Biol, 2010 Nov 9. PMID 20970342
  5. High-Throughput Identification of Nuclear Envelope Protein Interactions in Schizosaccharomyces pombe Using an Arrayed Membrane Yeast-Two Hybrid Library. Varberg JM, et al. G3 (Bethesda), 2020 Dec 3. PMID 33109728, Free PMC Article

See all (14) citations in PubMed

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by PomBase

Function Evidence Code Pubs
enables phospholipid binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
enables structural constituent of nuclear pore IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
involved_in NLS-bearing protein import into nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in nuclear pore organization IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in ribosomal subunit export from nucleus ISO
Inferred from Sequence Orthology
more info
  
Component Evidence Code Pubs
is_active_in nuclear envelope HDA PubMed 
is_active_in nuclear membrane IEA
Inferred from Electronic Annotation
more info
  
is_active_in nuclear periphery IDA
Inferred from Direct Assay
more info
 PubMed 
part_of nuclear pore IDA
Inferred from Direct Assay
more info
 PubMed 
part_of nuclear pore central transport channel IBA
Inferred from Biological aspect of Ancestor
more info
  
part_of nuclear pore nuclear basket IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
nucleoporin Nup40

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003424.3 Reference assembly

    Range
    1351565..1353733 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001018734.3 → NP_593304.1  nucleoporin Nup40 [Schizosaccharomyces pombe]

    See identical proteins and their annotated locations for NP_593304.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    O13838
    Conserved Domains (1) summary
    pfam05172
    Location:163 → 261
    Nup35_RRM; Nup53/35/40-type RNA recognition motif
Nucleotide Protein
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