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rqt4 transcription coactivator Rqt4 [ Schizosaccharomyces pombe (fission yeast) ]

Gene ID: 2542431, updated on 18-Sep-2024

Summary

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Official Symbol
rqt4
Official Full Name
transcription coactivator Rqt4
Primary source
PomBase:SPAC1A6.01c
Locus tag
SPOM_SPAC1A6.01C
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Schizosaccharomyces pombe (strain: 972h-)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
Also known as
SPAC23C4.20c
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Genomic context

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See rqt4 in Genome Data Viewer
Location:
chromosome: I
Exon count:
2
Sequence:
Chromosome: I; NC_003424.3 (1066192..1068678, complement)

Chromosome I - NC_003424.3Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene DSIF transcription elongation factor complex subunit Spt5 Neighboring gene ncRNA Neighboring gene WD repeat-containing protein Neighboring gene ncRNA Neighboring gene lysophospholipase Plb3

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003424.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Identification of a novel trigger complex that facilitates ribosome-associated quality control in mammalian cells. Hashimoto S, et al. Sci Rep, 2020 Feb 25. PMID 32099016, Free PMC Article
  2. Hierarchical modularity and the evolution of genetic interactomes across species. Ryan CJ, et al. Mol Cell, 2012 Jun 8. PMID 22681890, Free PMC Article
  3. ORFeome cloning and global analysis of protein localization in the fission yeast Schizosaccharomyces pombe. Matsuyama A, et al. Nat Biotechnol, 2006 Jul. PMID 16823372
  4. Transcription and RNA-processing in fission yeast mitochondria. Schäfer B, et al. RNA, 2005 May. PMID 15811919, Free PMC Article
  5. The genome sequence of Schizosaccharomyces pombe. Wood V, et al. Nature, 2002 Feb 21. PMID 11859360

See all (9) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by PomBase

Function Evidence Code Pubs
enables zinc ion binding ISM
Inferred from Sequence Model
more info
  
Process Evidence Code Pubs
involved_in positive regulation of DNA-templated transcription IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in rescue of stalled ribosome NAS
Non-traceable Author Statement
more info
  
Component Evidence Code Pubs
part_of RQC-trigger complex TAS
Traceable Author Statement
more info
 PubMed 
is_active_in cytosol HDA PubMed 
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
transcription coactivator Rqt4

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003424.3 Reference assembly

    Range
    1066192..1068678 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001018588.3 → NP_593192.1  transcription coactivator Rqt4 [Schizosaccharomyces pombe]

    See identical proteins and their annotated locations for NP_593192.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    O13855, Q9UTB9
    Conserved Domains (1) summary
    pfam06221
    Location:192 → 244
    zf-C2HC5; Putative zinc finger motif, C2HC5-type
Nucleotide Protein
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