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cph1 Clr6 histone deacetylase-associated PHD protein-1 Cph1 [ Schizosaccharomyces pombe (fission yeast) ]

Gene ID: 2542318, updated on 18-Sep-2024

Summary

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Official Symbol
cph1
Official Full Name
Clr6 histone deacetylase-associated PHD protein-1 Cph1
Primary source
PomBase:SPAC16C9.05
Locus tag
SPOM_SPAC16C9.05
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Schizosaccharomyces pombe (strain: 972h-)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
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Genomic context

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See cph1 in Genome Data Viewer
Location:
chromosome: I
Exon count:
1
Sequence:
Chromosome: I; NC_003424.3 (799367..800981)

Chromosome I - NC_003424.3Genomic Context describing neighboring genes Neighboring gene CCR4-Not complex subunit Mot2 Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ATP-dependent RNA helicase Upf1 Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003424.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Cdk9 and H2Bub1 signal to Clr6-CII/Rpd3S to suppress aberrant antisense transcription. Sansó M, et al. Nucleic Acids Res, 2020 Jul 27. PMID 32496538, Free PMC Article
  2. Class I histone deacetylase complex: Structure and functional correlates. Wang X, et al. Proc Natl Acad Sci U S A, 2023 Jul 25. PMID 37459529, Free PMC Article
  3. Distinct roles of HDAC complexes in promoter silencing, antisense suppression and DNA damage protection. Nicolas E, et al. Nat Struct Mol Biol, 2007 May. PMID 17450151
  4. Two assembly modes for SIN3 histone deacetylase complexes. Wang C, et al. Cell Discov, 2023 Apr 19. PMID 37076472, Free PMC Article
  5. Chromatin Central: towards the comparative proteome by accurate mapping of the yeast proteomic environment. Shevchenko A, et al. Genome Biol, 2008. PMID 19040720, Free PMC Article

See all (19) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by PomBase

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in transcription initiation-coupled chromatin remodeling IC
Inferred by Curator
more info
  
Component Evidence Code Pubs
part_of Rpd3S complex IBA
Inferred from Biological aspect of Ancestor
more info
  
part_of Rpd3S complex IDA
Inferred from Direct Assay
more info
 PubMed 
is_active_in cytosol HDA PubMed 
is_active_in nucleus HDA PubMed 

General protein information

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Preferred Names
Clr6 histone deacetylase-associated PHD protein-1 Cph1

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003424.3 Reference assembly

    Range
    799367..800981
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001018476.3 → NP_593079.1  Clr6 histone deacetylase-associated PHD protein-1 Cph1 [Schizosaccharomyces pombe]

    See identical proteins and their annotated locations for NP_593079.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    Q09819
    Conserved Domains (1) summary
    cd15535
    Location:119 → 163
    PHD1_Rco1; PHD finger 1 found in Saccharomyces cerevisiae transcriptional regulatory protein Rco1 and similar proteins
Nucleotide Protein
Heading Accession and Version

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