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dbr1 [ Schizosaccharomyces pombe (fission yeast) ]

Gene ID: 2542277, updated on 11-Sep-2024

Summary

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Official Symbol
dbr1
Primary source
PomBase:SPAC17A5.02c
Locus tag
SPOM_SPAC17A5.02C
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Schizosaccharomyces pombe (strain: 972h-)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
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Genomic context

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Location:
chromosome: I
Exon count:
5
Sequence:
Chromosome: I; NC_003424.3 (1753774..1755612, complement)

Chromosome I - NC_003424.3Genomic Context describing neighboring genes Neighboring gene peroxin-6 Neighboring gene meiotic recombination protein Rec25 Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene 60S ribosomal protein L3

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003424.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The Fission Yeast Pre-mRNA-processing Factor 18 (prp18+) Has Intron-specific Splicing Functions with Links to G1-S Cell Cycle Progression. Vijaykrishna N, et al. J Biol Chem, 2016 Dec 30. PMID 27875300, Free PMC Article
  2. Intronic snoRNA biosynthesis in Saccharomyces cerevisiae depends on the lariat-debranching enzyme: intron length effects and activity of a precursor snoRNA. Ooi SL, et al. RNA, 1998 Sep. PMID 9740128, Free PMC Article
  3. Severe growth defect in a Schizosaccharomyces pombe mutant defective in intron lariat degradation. Nam K, et al. Mol Cell Biol, 1997 Feb. PMID 9001235, Free PMC Article
  4. Early splicing functions of fission yeast Prp16 and its unexpected requirement for gene Silencing is governed by intronic features. Vijayakumari D, et al. RNA Biol, 2019 Jun. PMID 30810475, Free PMC Article
  5. Regulation of Cdc2p and Cdc13p is required for cell cycle arrest induced by defective RNA splicing in fission yeast. Shimada M, et al. J Biol Chem, 2005 Sep 23. PMID 16049013

See all (11) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by PomBase

Function Evidence Code Pubs
enables RNA lariat debranching enzyme activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables RNA lariat debranching enzyme activity IGI
Inferred from Genetic Interaction
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA cis splicing, via spliceosome IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in mRNA splicing, via spliceosome IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in nucleus HDA PubMed 
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  
part_of spliceosomal complex IC
Inferred by Curator
more info
  

General protein information

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Preferred Names
RNA lariat debranching enzyme Dbr1

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003424.3 Reference assembly

    Range
    1753774..1755612 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001018903.4 → NP_593470.3  RNA lariat debranching enzyme Dbr1 [Schizosaccharomyces pombe]

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    O13765, P78964
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases
Research Materials