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cta5 Ca(2+)/Mn(2+)-transporting P-type ATPase P5 type Cta5 [ Schizosaccharomyces pombe (fission yeast) ]

Gene ID: 2542076, updated on 18-Sep-2024

Summary

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Official Symbol
cta5
Official Full Name
Ca(2+)/Mn(2+)-transporting P-type ATPase P5 type Cta5
Primary source
PomBase:SPAC29A4.19c
Locus tag
SPOM_SPAC29A4.19C
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Schizosaccharomyces pombe (strain: 972h-)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
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Genomic context

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See cta5 in Genome Data Viewer
Location:
chromosome: I
Exon count:
4
Sequence:
Chromosome: I; NC_003424.3 (5106559..5113025)

Chromosome I - NC_003424.3Genomic Context describing neighboring genes Neighboring gene RSC-type complex ATPase Snf21 Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene elongator complex histone acetyltransferase subunit Elp3 Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene histone chaperone, Clr6 and Rpd3L complex subunit Prw1 Neighboring gene ncRNA Neighboring gene integral mitochondrial outer membrane (MOM) protein Neighboring gene serine/threonine protein kinase Hal4

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003424.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Characterization of a fission yeast P(5)-type ATPase homologue that is essential for Ca(2+)/Mn(2+ )homeostasis in the absence of P(2)-type ATPases. Furune T, et al. Genes Genet Syst, 2008 Oct. PMID 19168988
  2. Hierarchical modularity and the evolution of genetic interactomes across species. Ryan CJ, et al. Mol Cell, 2012 Jun 8. PMID 22681890, Free PMC Article
  3. ORFeome cloning and global analysis of protein localization in the fission yeast Schizosaccharomyces pombe. Matsuyama A, et al. Nat Biotechnol, 2006 Jul. PMID 16823372
  4. The genome sequence of Schizosaccharomyces pombe. Wood V, et al. Nature, 2002 Feb 21. PMID 11859360
  5. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. the putative P(5)-type ATPase encoded by SPAC29A4.19c is essential for Ca(2+) and Mn(2+ )homeostasis in the absence of P(2)-type ATPases, Pmc1p or Pmr1p, respectively.
    Title: Characterization of a fission yeast P(5)-type ATPase homologue that is essential for Ca(2+)/Mn(2+ )homeostasis in the absence of P(2)-type ATPases.
Submit: New GeneRIF Correction

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by PomBase

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
  
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
  
enables ATPase-coupled monoatomic cation transmembrane transporter activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables ATPase-coupled monoatomic cation transmembrane transporter activity IMP
Inferred from Mutant Phenotype
more info
 PubMed 
enables P-type transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in calcium ion transmembrane transport IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in intracellular calcium ion homeostasis IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in transmembrane transport IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in Golgi apparatus IDA
Inferred from Direct Assay
more info
 PubMed 
is_active_in endoplasmic reticulum HDA PubMed 
is_active_in membrane IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
Ca(2+)/Mn(2+)-transporting P-type ATPase P5 type Cta5

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003424.3 Reference assembly

    Range
    5106559..5113025
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001020292.2 → NP_594863.1  Ca(2+)/Mn(2+)-transporting P-type ATPase P5 type Cta5 [Schizosaccharomyces pombe]

    See identical proteins and their annotated locations for NP_594863.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    O14022
    Conserved Domains (5) summary
    COG4087
    Location:809 → 853
    COG4087; Soluble P-type ATPase [General function prediction only]
    TIGR01657
    Location:33 → 1083
    P-ATPase-V; P-type ATPase of unknown pump specificity (type V)
    pfam00122
    Location:226 → 468
    E1-E2_ATPase; E1-E2 ATPase
    pfam00690
    Location:143 → 214
    Cation_ATPase_N; Cation transporter/ATPase, N-terminus
    pfam13246
    Location:592 → 629
    Cation_ATPase; Cation transport ATPase (P-type)
Nucleotide Protein
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