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rpb9 DNA-directed RNA polymerase II complex TFIIS subunit Rpb9 [ Schizosaccharomyces pombe (fission yeast) ]

Gene ID: 2541470, updated on 18-Sep-2024

Summary

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Official Symbol
rpb9
Official Full Name
DNA-directed RNA polymerase II complex TFIIS subunit Rpb9
Primary source
PomBase:SPAPYUG7.04c
Locus tag
SPOM_SPAPYUG7.04C
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Schizosaccharomyces pombe (strain: 972h-)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
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Genomic context

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See rpb9 in Genome Data Viewer
Location:
chromosome: I
Exon count:
5
Sequence:
Chromosome: I; NC_003424.3 (4751390..4752405, complement)

Chromosome I - NC_003424.3Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene MAP kinase-interacting protein Sin1 Neighboring gene ncRNA Neighboring gene septin ring organizing protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene delta-1-pyrroline-5-carboxylate reductase Neighboring gene PPPDE peptidase family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003424.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Deletion of the non-essential Rpb9 subunit of RNA polymerase II results in pleiotropic phenotypes in Schizosaccharomyces pombe. Bhardwaj V, et al. Biochim Biophys Acta Proteins Proteom, 2021 Jul. PMID 33775921
  2. Identification of the gene and the protein of RNA polymerase II subunit 9 (Rpb9) from the fission yeast Schizosacharomyces pombe. Sakurai H, et al. Gene, 1998 Oct 9. PMID 9852944
  3. The Rpb4 subunit of fission yeast Schizosaccharomyces pombe RNA polymerase II is essential for cell viability and similar in structure to the corresponding subunits of higher eukaryotes. Sakurai H, et al. Mol Cell Biol, 1999 Nov. PMID 10523639, Free PMC Article
  4. Splicing Defects of the Profilin Gene Alter Actin Dynamics in an S. pombe SMN Mutant. Antoine M, et al. iScience, 2020 Jan 24. PMID 31927482, Free PMC Article
  5. Intracellular contents and assembly states of all 12 subunits of the RNA polymerase II in the fission yeast Schizosaccharomyces pombe. Kimura M, et al. Eur J Biochem, 2001 Feb. PMID 11168400

See all (23) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Deletion of the non-essential Rpb9 subunit of RNA polymerase II results in pleiotropic phenotypes in Schizosaccharomyces pombe.
    Title: Deletion of the non-essential Rpb9 subunit of RNA polymerase II results in pleiotropic phenotypes in Schizosaccharomyces pombe.
Submit: New GeneRIF Correction

Pathways from PubChem

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Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by PomBase

Function Evidence Code Pubs
contributes_to DNA-directed 5'-3' RNA polymerase activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in maintenance of transcriptional fidelity during transcription elongation by RNA polymerase II IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in transcription initiation at RNA polymerase II promoter IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in transcription-coupled nucleotide-excision repair IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
part_of RNA polymerase II, core complex IBA
Inferred from Biological aspect of Ancestor
more info
  
part_of RNA polymerase II, core complex IDA
Inferred from Direct Assay
more info
 PubMed 
part_of RNA polymerase II, holoenzyme EXP
Inferred from Experiment
more info
 PubMed 
is_active_in cytosol HDA PubMed 
is_active_in nucleus HDA PubMed 

General protein information

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Preferred Names
DNA-directed RNA polymerase II complex TFIIS subunit Rpb9

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003424.3 Reference assembly

    Range
    4751390..4752405 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001020132.3 → NP_594705.1  DNA-directed RNA polymerase II complex TFIIS subunit Rpb9 [Schizosaccharomyces pombe]

    See identical proteins and their annotated locations for NP_594705.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    O74635
    Conserved Domains (1) summary
    COG1594
    Location:3 → 113
    RPB9; DNA-directed RNA polymerase, subunit M/Transcription elongation factor TFIIS [Transcription]
Nucleotide Protein
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