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slu7 splicing factor Slu7 [ Schizosaccharomyces pombe (fission yeast) ]

Gene ID: 2540941, updated on 18-Sep-2024

Summary

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Official Symbol
slu7
Official Full Name
splicing factor Slu7
Primary source
PomBase:SPBC365.05c
Locus tag
SPOM_SPBC365.05C
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Schizosaccharomyces pombe (strain: 972h-)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
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Genomic context

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See slu7 in Genome Data Viewer
Location:
chromosome: II
Exon count:
1
Sequence:
Chromosome: II; NC_003423.3 (2505270..2506673, complement)

Chromosome II - NC_003423.3Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene 60S ribosomal protein eL21 Neighboring gene RNA-binding and ribosome biogenesis protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene small ubiquitin-like modifier pmt3 Neighboring gene TATA element modulatory factor-like protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003423.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Splicing functions and global dependency on fission yeast slu7 reveal diversity in spliceosome assembly. Banerjee S, et al. Mol Cell Biol, 2013 Aug. PMID 23754748, Free PMC Article
  2. Dim1p is required for efficient splicing and export of mRNA encoding lid1p, a component of the fission yeast anaphase-promoting complex. Carnahan RH, et al. Eukaryot Cell, 2005 Mar. PMID 15755920, Free PMC Article
  3. The proper splicing of RNAi factors is critical for pericentric heterochromatin assembly in fission yeast. Kallgren SP, et al. PLoS Genet, 2014. PMID 24874881, Free PMC Article
  4. Sde2 is an intron-specific pre-mRNA splicing regulator activated by ubiquitin-like processing. Thakran P, et al. EMBO J, 2018 Jan 4. PMID 28947618, Free PMC Article
  5. Proteomics analysis reveals stable multiprotein complexes in both fission and budding yeasts containing Myb-related Cdc5p/Cef1p, novel pre-mRNA splicing factors, and snRNAs. Ohi MD, et al. Mol Cell Biol, 2002 Apr. PMID 11884590, Free PMC Article

See all (15) citations in PubMed

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by PomBase

Function Evidence Code Pubs
enables pre-mRNA 3'-splice site binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in RNA splicing IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in generation of catalytic spliceosome for second transesterification step ISO
Inferred from Sequence Orthology
more info
  
involved_in mRNA cis splicing, via spliceosome IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
is_active_in nucleus HDA PubMed 
is_active_in nucleus IDA
Inferred from Direct Assay
more info
 PubMed 
part_of spliceosomal complex IBA
Inferred from Biological aspect of Ancestor
more info
  
part_of spliceosomal complex IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
splicing factor Slu7

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003423.3 Reference assembly

    Range
    2505270..2506673 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001021944.3 → NP_596034.1  splicing factor Slu7 [Schizosaccharomyces pombe]

    See identical proteins and their annotated locations for NP_596034.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    Q9Y7Y2
    Conserved Domains (1) summary
    pfam11708
    Location:154 → 347
    Slu7; Pre-mRNA splicing Prp18-interacting factor
Nucleotide Protein
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